KEGG   Brachypodium distachyon (stiff brome): 100838230
Entry
100838230         CDS       T01717                                 
Name
(RefSeq) THO complex subunit 3 isoform X2
  KO
K12880  THO complex subunit 3
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03013  Nucleocytoplasmic transport
bdi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100838230
  09122 Translation
   03013 Nucleocytoplasmic transport
    100838230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100838230
   03041 Spliceosome [BR:bdi03041]
    100838230
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     100838230
Spliceosome [BR:bdi03041]
 Complex C
  Other components
   EJC/TREX
    100838230
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    100838230
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_Aladin DSE1_N Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_HPS5 eIF2A Beta-prop_EIPR1 Tricorn_2nd NBCH_WD40 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_DCAF12 WD_LRWD1 Connectase_N
Other DBs
NCBI-GeneID: 100838230
NCBI-ProteinID: XP_003577956
UniProt: I1IP80
LinkDB
Position
4
AA seq 328 aa
MEGKEDDRKGSAAAGSSAPGARFKNLVSREYYSHKKKVHSVAWNCIGTKLASGSIDHTAR
VWSIDPHGHSKVKDIELKGHTDSVDQLCWDPKHPDTVATAAADKSIRLWDARSGKCQVVE
LSGENINITYKHDGTHIAVGNKEDELTIVDVRKLKPIHKQKFPYEINEIAWNKTGDLFFI
TTGLGFVEVVSYPSLDVVCKLNAHTAGCYCIAMDPLDRYFAVGSADSLVSLWNVKELLCI
KTFTKLEWPVRTVSFNHTGEFIAYASEDPFIDIANIQTGRSIHQIPCKAAMNSVEWNPKY
NLLAYAGDDKNKYQADEGVFRIFGFEST
NT seq 987 nt   +upstreamnt  +downstreamnt
atggaggggaaagaagacgacaggaagggctccgccgccgccggcagctcagcgccgggg
gcgagattcaagaacctggtgtccagggaatactacagccacaagaagaaggtgcactct
gtagcctggaactgcataggaacaaagcttgcttcaggctcaattgatcacactgcacgt
gtctggagcattgatccccacggccattccaaggttaaagacattgaactgaaaggccac
acagatagtgtagatcagttatgctgggatccaaagcatcctgacacagttgctactgca
gctgctgacaagtcgattcgcctttgggacgcacgaagtgggaaatgccaagttgttgaa
cttagtggagaaaacatcaacatcacatacaaacatgacgggactcacattgctgttgga
aataaggaggatgagctgaccatagtggacgttcggaagctaaaaccgattcacaaacaa
aagtttccttatgagatcaatgagattgcatggaataaaactggagatttattcttcatc
actactggacttggatttgtcgaagtggttagctatccttctcttgatgttgtctgcaaa
ctaaatgctcatacagcaggatgctattgcattgcaatggatccccttgataggtatttt
gctgttggaagtgcagactcacttgtcagtctttggaatgtgaaagagttgctatgcatt
aaaaccttcacaaaacttgagtggcctgtaagaacagttagcttcaatcacactggagaa
tttattgcatatgccagtgaagatcctttcattgacattgccaatattcagactggacga
tcaattcatcagataccatgcaaggcagctatgaatagtgttgaatggaaccctaaatac
aacctcctggcttatgcaggagacgacaagaataagtaccaggctgatgaaggtgttttc
cgaatatttggctttgaaagcacatga

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