Brachypodium distachyon (stiff brome): 100838303
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Entry
100838303 CDS
T01717
Name
(RefSeq) LOW QUALITY PROTEIN: probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
100838303
Enzymes [BR:
bdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
100838303
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GFIT
Motif
Pfam:
Rhamnogal_lyase
fn3_3
CBM-like
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
100838303
NCBI-ProteinID:
XP_024318014
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Position
3:complement(24345855..24348319)
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AA seq
581 aa
AA seq
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MAMGIVLLAVALSLMQVLAGAAAPSDGGVTLHVDRNQVLVDNGLVQVALSRPDGHITGVR
YGGERNLLHSSRRGGNTGGYWDLVWNSPGSGQRGNYDMLEGSELSVVSESKDQVEVSFRS
TYNPAKQTGVPLNLDKRLVMLKGSSGFYCYAILEHGGDTPAIDIRVAFKLNTERFNYMAI
SDDIQRYMPRAKDRDAPRSAPLAFKEAVLLVDPSESQFKGEVDDKYEYSLDTKDNRVHGW
VAAAGHPSCPIGFWVVTPSNEFKPGGRLKRYLTSHVGPTSLSVFIGTHYVGDDIVARVRD
GEYWNKVMGPVFIYLNMGPGGPLTLWEDANAVAESEAAKWPYGFLGSKDFPKAHERGSIT
GRLSVTDRYVSRDDMPARMAYVGLAALGQHGSWATESKGYQFWSRASATSGEFTIDNVRA
GDYNLYAWVPGVLGDYINTTRVRVTPGRAINLGDLVFEPPRSGPTLWEIGVPDRSSAEMF
VPDPDPKYLNKLFANNDKYRQYGLWERYADLYPTDDLVYTVGKSNHSKDWFFAHVTRKVG
DYNAPTTRQIRFNLSRVLPDGTYTLRIALAAAHMSRLQVTN
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggccatgggcattgtcctactcgccgttgccttgtcgctaatgcaggtcctcgccggg
gcggcagcgccgtcagatggcggtgttacgctgcacgtcgatcgtaaccaggtgctggtg
gacaacggcttggtgcaggtggcgctgtccaggccggacggccacatcacaggcgtccgc
tacggcggggaacggaatctgctgcactcgagcagaaggggtggaaacacaggcgggtac
tgggatttagtctggaactcccccgggtccggccagcgaggcaattacgatatgcttgaa
ggttcagagttgagcgtggtatctgaaagcaaggatcaagtggaggtgtctttccggagc
acttacaatcctgcaaagcagaccggcgtcccgctcaacctcgacaagaggctggtgatg
ctgaaaggcagctccgggttctactgctacgcgatcttggagcacggcggggacacaccg
gccatcgacatcagagtggccttcaagctcaacacggagaggttcaactacatggccatc
tcggacgacatccagaggtacatgcctcgggccaaggacagggacgcgccccgcagcgcc
ccgttggccttcaaggaggccgtgctgcttgtggacccctcggagtcgcagttcaaaggc
gaggtggacgacaagtacgagtactcgttggacaccaaggacaacagggtccacggctgg
gtcgccgccgccggccaccccagctgccccatcggcttctgggtcgtcacccccagcaac
gaattcaagcccggcgggcgcctcaagcggtacctcacctcccacgttggccccacctcc
ttgagcgtgttcattgggacgcattacgtcggggacgacatcgtggcgcgcgtcagggac
ggcgagtactggaacaaagtcatgggccctgtcttcatctacctcaacatgggccctgga
ggcccgctgacgctctgggaggacgccaacgcggtcgcggaatccgaggcggccaagtgg
ccctacggcttcctgggatccaaagatttccccaaggcccacgagagaggctcgatcacc
ggccgattgtcggttacggacaggtacgtgagccgcgacgacatgcctgctcggatggcg
tacgtcggcctggccgcgcttgggcagcatgggtcgtgggcaacggagagcaagggctac
cagttctggagcagggcgtccgcgacgtccggagagttcaccatcgacaatgtccgggcc
ggagactacaacctctacgcgtgggtccctggggttctcggagactacatcaacaccacc
cgcgtgagagtaacacccggccgtgcaatcaaccttggggatcttgtgtttgagcctccg
agatcaggacccacactgtgggagatcggcgttcctgaccgaagttccgcagagatgttc
gtcccagaccccgaccccaagtacctcaataaactcttcgccaacaatgacaaatacagg
cagtatggtttgtgggagaggtacgccgacctgtaccccacggacgatcttgtctacacc
gtcggcaaaagtaatcactccaaggactggttctttgcacatgtcacccgaaaggtaggc
gactacaacgcaccaacgacacgacagatacggttcaacctgagccgcgtcttgccggac
ggcacatacaccttacgcattgctcttgcagctgctcacatgtccagactacaggtaact
aattaa
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