Brachypodium distachyon (stiff brome): 100838357
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Entry
100838357 CDS
T01717
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03020
RNA polymerase
bdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100838357
09124 Replication and repair
03420 Nucleotide excision repair
100838357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100838357
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100838357
Enzymes [BR:
bdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100838357
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100838357
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100838357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
100838357
NCBI-ProteinID:
XP_003561873
UniProt:
I1GQ05
LinkDB
All DBs
Position
1:complement(10561333..10569866)
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AA seq
1228 aa
AA seq
DB search
MEDDEYEEGMEMEMGGHQQLHHRGYGADEEVDGGYGGGGDGVDMEDEDAEGEEARDEEEI
TQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEF
AETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVVKKGHDC
EEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVLI
AQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYI
RATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQV
ALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCA
LGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIK
AKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK
PRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEIS
PAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDY
GRCSRPLFIVDGQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDTEEEETTMISMT
INDLVSARNNPQEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG
IYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSV
IMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLA
PPGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGL
RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRM
TIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKL
TAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAH
GAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKL
LFQELMAMAIAPRMLTHDIKSGKDQKKR
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgacgagtacgaggaggggatggagatggagatgggaggtcaccagcagctc
caccaccgggggtacggagctgacgaggaggttgacgggggatacggcggcggcggggac
ggggtggatatggaggacgaggatgctgagggtgaggaggcgcgggatgaggaggagatc
acacaggaggacgcctgggccgtcatctccgcctacttcgaggagaagggcctcgtgcgc
cagcaactcgactccttcgatgagttcattcagaacaccatgcaggagatcgtcgacgaa
tccgcggacatcgagatccggcccgagtcgcagcacaatcccggccgacaggccgagttt
gccgagacactccacaagatcagctttggtcaaatctatctgagcaaaccaatgatgact
gaagctgatggagagacagctaccttattccccaaatcagcaaggctcaggaacctgaca
tactcagcaccactttatgttgatgtatcatatagagttgtaaagaaaggacatgactgt
gaagaagttacagaaactatggagtatccaaaagtcttcattgggaaggttccaatcatg
ttgcgttctagttactgcacactatttcaacaatctgaaaaggacctcacagaacttgga
gagtgcccttatgaccaaggaggatattttgtaatcaatggtagtgaaaaggttctcatt
gcccaggaaaagatgagcaccaatcatgtctatgtgtttaagaagcggcaaccaaataag
tttgcatatgtggctgaagtccgttctatggcagagaaccagaatagacctgctagtagc
atgttcgttcgaatgctttctcgtgccggtgcgaaagggggctcatctggtcaatatatc
cgcgctacattgccgtacattcgtgcagatattcccatcatcattgtgtttcgggcatta
ggatttgttgctgacaaagatatactggagcacatatgttacgatttctctgatacacaa
atgatggaattgctacgcccatctttggaggaagcttttgtcattcaaaatcaacaggtt
gctctggactacattggaaagcgtggtgctacagttggtgtaactcgagaaaaaagaatc
aagtatgccaaagagatacttcaaaaggagatgttgccccatgttggtgtcggcgaattc
tgtgaaactaaaaaggcatactactttgggtatattattcaccgcctattgatgtgcgct
cttggtcgaagagctgaggatgacagagatcattacggtaacaaaaggctcgaccttgca
ggtccattgcttggaggactgttcagaatgcttttcaggaaattgacaagggatgtgaga
tcatatgttcagaagtgtgttgataatggaaaggatgttaatttgcaatttgccatcaaa
gcgaaaactattactagtggattgaagtattccctggctactggaaactggggacaggct
aaccaagctggtacaagagccggtgtttctcaggtgcttaatcgccttacctatgcttct
acattatcacatctgcggaggttgaactctcccattgggcgtgaagggaaattggcaaaa
cctcgccaattgcataattctcattggggaatgatgtgtcctgctgaaacacctgaagga
caagcctgtggtttggttaaaaatcttgccttgatggtatatatcactgttggttctgcc
gcaaatcctattttggaatttttggaagagtggggcacagaaaatttcgaggaaatatca
ccagcagtcattcctcaagctgctaaaatatttgtcaatggatgttgggttggaattcat
aggaaccctgacctattggtgaagacacttcggcgtttaagaagacagattgatgtcaac
actgaagttggagtggtgcgtgatattcgtcttaaagaacttcgactctacacggactat
gggcgttgcagtcgtccactgtttattgttgatggccagaggcttctcattaagaagaaa
catatccgagcattgcagcagagggagactcctgacgaaggttggcatgacttggttgcc
aaaggatttatagagtacatagatacagaagaggaagagactactatgatttctatgact
ataaatgaccttgttagtgcaagaaataatccacaggaggcgtattctgagacttacacg
cattgtgagattcacccttcactgattcttggtgtgtgtgcgtcgattattccttttcct
gaccacaatcagtcacctcgtaatacatatcagtctgctatgggaaagcaagccatggga
atatatgttaccaattatcagttaagaatggatacattggcgtatgttctgtactaccct
cagaagcctcttgttactactcgtgctatggagcatttgcacttcaggcagttacctgct
ggcattaatgcaattgttgctattgcatgctactctggatataaccaagaagattcggtt
atcatgaatcaatcttcaatagaccgtggatttttcagatcgctatttttccgctcttac
agagatgaggaaaagaagatgggaactctcgtcaaagaggaatttggtcgtccaaatagg
gagaacactatgggaatgcgccatgggtcctacgataaactagatgatgatggacttgca
cctccaggaacaagggtttctggggaagatgtcattattgggaagacatctcctattcca
caagatgacgctcaagggcaagctactagatactcgaagcgtgatcatagtacttctctg
cgtcacagtgaaagtgggatggtggatcaggttcttttaacaacaaatgctgatggttta
agatttgtcaaggttagaatgcgatctgttcgcataccacaaattggagataagttcagc
agtaggcatggtcagaaaggaactgttggaatgacttacacacaagaggacatgccatgg
acaatcgaaggcatcacgcctgatatcattgtgaatccacatgctattccgtcccgtatg
actattggtcaactgatcgagtgtattatgggtaaagttgcagctcacatgggaaaggaa
ggagatgcaactcctttcactgatgttactgttgataacatcagtaaagcacttcacaaa
tgtggatatcagatgcgtggatttgagaccatgtacaacggtcacactggtagaaaattg
actgctatgattttcctaggtcccacttattaccagcggctcaagcacatggtggatgac
aaaattcactctagaggtcgtggtcctgtccagatactgaccaggcagccagcagagggg
cgctcacgtgatggtggtcttcgttttggagaaatggagcgggattgcatgattgctcat
ggtgctgcatttttcttgaaggaaagattattcgaccagagtgatgcttacagagtacat
gtatgtgaaaagtgtggactcattgcgattgctaatctcaagaagaattcctttgaatgc
agaggctgcaagaacaagacagacattgtccaggtacatatcccatacgcttgtaaactc
ctcttccaggagctcatggctatggccattgctcccaggatgctcacccatgatatcaag
tctgggaaggatcagaaaaaacgctga
DBGET
integrated database retrieval system
