Brachypodium distachyon (stiff brome): 100838678
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Entry
100838678 CDS
T01717
Name
(RefSeq) protein RNA-directed DNA methylation 3 isoform X2
Organism
bdi
Brachypodium distachyon (stiff brome)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
Spt5-NGN
KOWx_SPT5
KOW
KOW5_SPT5
Spt5_N
Motif
Other DBs
NCBI-GeneID:
100838678
NCBI-ProteinID:
XP_014754606
UniProt:
A0A0Q3G2G5
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Position
2:complement(17996294..18008019)
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AA seq
1649 aa
AA seq
DB search
MAVKGKGKQVASDTPGSSGAKRRSGTGGAGPSSSSAAAAKRRRRPGVLQFFDDQAGVDDD
CEDEEEEEEEEFDSEPEDGPDHGFFREKKTASANMMRTERSHPLPFLAQVKEEELSGDEL
EQFVKDRYSNRVKHSGYGGSTQEYDDDCTMDDALKEPTIWRVKCMVGRERQMAFCFMQKF
IDLKKFGTKVPIISAFSLDHMRGYVFVEAEKACDVTEACKGFCNVYVSRTSPVPAAEVPS
LLSTRAKPFEVSPGTWVRMKSGNYKGDLAQVVNAVDGRKRVLVKLIPRVDLLAISKKFGG
AVSLKDAAVPAPRLISSQELEFFGPHIERRADRQTGDVFEVLDGLMFKDGFLYKRVALSS
LIYWGIQPTDTELLKFSSSPSIKSSADDMDWLSSMYGQKKRNVPREHDMNASSSKDKCSK
ASNLKGSTSTESYDDDVNDAFNLHDLVLFGRKDFGVIIAVEKDGFKILKGGPEGSAVTVR
KQDIKKGCVDKMFTAVDHQKKIISINDTVKVLEGPAQGKQGVVKHLYMGILFIHNDSESE
NNGFFCAQCGSCENIKKRRELASSEDNPISMFSDSPFMPSEQTEQRNNDRPYRAREQLFS
IGEMLRIRKGPMKGYLCRVVRIFRNDVTVKLDSLLKIVTVQAEFLSVPTKRGDNSSSAAA
GPFGTQDTSFFGSEAEKTSWNNGLTSLGSDSWQPPSSSAFPFQNADGGAEADPWCKKTSS
SADGDCDPWCKKTTSADVGIWNNSTTQKDSSSDNSWDKQAGGGGLDVGGSSWAGAAVNKQ
SEKSDNWGEACKAVDMATGGNTDPWGSKVKVVTEEADGWGKSSLPPEKKLEDDGQGWGRS
FGTSNKEQEKEAVSKVADNSRSWDTAIAICDGSGDDAWGKSKENNGDGAVGWNKAITSNQ
NSGSGGWDTAAANWSKPSPVGQGHEEAWGKEKDSAAKSEEINDGGGSWKKAGSSDQVGAG
DWDKPKFSGNAGPSSWNKGEAVGGDNQNSNWSKPGGNFEGGRGFGRGRGRGWGQESGDLG
GRNDQGNLNSSWGNDSSARPSWRSDTQVSNEGGDSGGGGYRGRGRGRGQYGGRGRGRDNV
WGNGDRGSSEFGREGSSGDTLNWENSQPCRGSEGTKPCDENQTSTWNSSDDKKASGGEPN
DPWASKMTTKGQEQQCDAWSSKMTSTAGAENNNDSWNTKAKEPSCSDGTNWENAVSGEER
QGDPWASKTDCSTKGKEQETDPWASKVASTAGADNNKNGWNTKEKGNSTSSGAGEKEDTW
NIKGGNGNGGGWNNTGSSAAWSKPSSTSGDQEPAWSKPTYGDDDTGYGRGGFGRGNRGRG
RGRFGDGGSSWNGGSNLNDESGGERSEDRWNRRDSDGGRGRGRGRFGRGDRHQDNFGSGD
GDGGSWSSGRGNRGRGGGYRNWNDNNEGRSFSQGRGGGWSQSSDWNAGKKESTEGDQDFS
KGKSSWGGDKNDSWGGPKQSGGDDQAGKSDGSNAWNQNKPSLGDGSSVLGQWGGPSGDTT
TSRGGSVGGGGSCGNSENQAFSKGKSNWGSDKNDCWGAPKPHGGDDQAGKNDGNNSWNQT
KPSLGDGPSILGQWGGGAPVGSGVKSNEDGWNSSKGTEGGTKKEGSWGKPGGSGSGCGSQ
GGGGSSWDKGNAGGWNSNKGGDTSKGGGW
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgaaggggaagggcaagcaggtggcctccgacacgcccggctcctccggcgcc
aagcgccgtagcggcaccggcggcgcgggtccctcctcctcctctgccgctgccgcgaag
cgccgccgccgccctggtgtcctccagttcttcgacgaccaagccggcgtcgacgacgac
tgcgaggacgaagaggaggaggaggaggaggagttcgattcggagcccgaggatggcccg
gaccacggcttctttcgtgagaaaaagacagcgagtgctaatatgatgagaactgaaagg
tcacaccctcttccattccttgcacaagtaaaggaagaggagctaagtggtgatgaactt
gagcaatttgttaaggaccgttactctaatcgtgtgaaacattctggttatggtggctct
acccaagaatatgatgatgactgtaccatggatgatgcattgaaagagcctactatttgg
agggtcaaatgcatggttgggcgtgaacgccaaatggctttctgcttcatgcaaaagttc
attgatctgaagaagtttggtaccaaagtgccaattatctcagcattctcactcgatcat
atgagaggatatgtttttgttgaagcagagaaggcctgtgatgttaccgaggcgtgcaaa
ggattttgcaatgtttatgtaagccgaactagtcctgtccccgcagctgaagttcctagc
ttgctatcaactcgtgcaaaaccatttgaagtctcgcctggaacatgggtgcgcatgaaa
agtggaaattataaaggagatctagcacaggttgttaatgcagttgatggacgtaaaagg
gtgctggtaaaactcataccaagagttgatctcctagctatttcgaaaaaattcggtggc
gcagtttccctcaaagatgccgcagttcctgcaccacgactaatcagctcacaggagcta
gagttctttggacctcatatcgaaaggagggctgatcgtcagactggtgatgtttttgaa
gtgcttgatggtttgatgttcaaagatggtttcctgtataagagagtcgcgcttagttct
ttgatttactgggggatacaaccaacggatactgagcttctcaagttctcttctagtcca
agcattaaaagttcagctgacgacatggattggctctccagcatgtatggtcaaaagaaa
agaaacgtgcccagagaacacgatatgaatgcatcatcttctaaagacaaatgctccaag
gcatcaaatcttaaaggttccactagtactgagagttatgatgacgacgtaaatgatgca
ttcaatcttcatgatcttgtactttttgggcgaaaagattttggtgtgatcattgctgtt
gagaaagatggttttaagattttaaaaggtggtcctgaaggatctgctgtgacagttaga
aagcaggatattaagaaaggatgtgtagacaaaatgtttacagctgttgaccatcagaag
aagattatatccattaatgacactgttaaagttctggaaggaccagcacagggtaagcaa
ggagttgttaaacacttgtacatggggatactatttatacataatgatagtgaaagtgag
aacaacggttttttctgtgcccaatgcgggtcttgtgaaaatatcaagaaaagaagggaa
ctggcaagttcggaggacaacccaatttccatgttctcggactcacctttcatgccatct
gagcaaactgagcaacggaacaacgacaggccttacagggccagagaacaactcttctca
attggggagatgttgcgtattcggaagggacctatgaagggctatctctgccgtgtagtt
cgaatatttcgaaatgatgtaactgttaagctagattctctactgaagatcgttacagtg
caagcagaatttctctcagtcccaactaaaagaggggataactcatctagtgccgcagct
ggtccttttggaactcaggatacatcattctttggttcagaagcagagaaaacctcatgg
aacaatggattgacatcacttggcagtgattcttggcaacctccttcaagttcggcgttt
ccatttcagaatgcagatggaggagcagaagctgatccctggtgtaagaaaacatcatct
tccgctgatggtgattgtgatccatggtgcaagaaaacaacatctgcagatgttggaata
tggaacaatagcactacacagaaggacagctccagtgacaattcatgggataaacaagct
ggaggtggtggattagatgttggtggcagctcttgggctggagcagcagtcaacaaacag
agtgaaaagagtgacaactggggtgaggcatgtaaggcggtggacatggcaactggtggc
aacacagatccttggggcagcaaggtcaaagtagttacggaagaagcagatggctgggga
aagtcgtcactgccaccagagaaaaagttggaggacgatggtcaaggatggggccgatct
tttgggacgtcaaacaaagagcaagaaaaagaggcagtttcaaaagttgcagacaacagc
aggtcttgggatactgctattgctatttgtgatggttcgggtgatgatgcctgggggaag
tcaaaagagaataatggtgacggagcagttggatggaataaagctataacctctaaccaa
aacagtggctctggaggttgggatactgctgctgctaactggagtaagccatctcctgtg
ggtcaaggacatgaagaagcatggggcaaagaaaaagattcagccgctaagtctgaagaa
ataaacgacggtggtgggagctggaaaaaagctggatcatcagaccaagttggtgcagga
gattgggataaaccaaaattttctgggaatgctggtccatccagctggaataagggagag
gcagttggaggagataatcagaatagcaactggagcaaacctggtggaaactttgaaggt
ggccgtgggtttgggcgaggacgtggtagaggctggggccaagaatctggggatttaggt
ggcagaaatgaccaaggaaacttgaatagctcatggggtaatgacagttctgcaaggccc
tcttggaggtctgatacgcaggtaagcaacgaaggtggagattctggtggtggtggatac
agggggaggggaagaggaaggggccaatacggaggacgagggagaggaagagacaatgtt
tggggaaatggagatcgaggtagttctgagtttggaagggaagggagcagtggtgataca
ctaaactgggaaaacagtcagccttgcaggggcagtgaaggcaccaagccatgtgatgag
aatcagacttccacttggaacagctcagatgataaaaaagcgtccggaggtgaaccaaat
gatccttgggcgagcaagatgactactaaaggccaagaacaacaatgtgatgcttggtca
agcaagatgacttcgactgcaggtgccgagaacaacaatgatagctggaacacaaaggca
aaagagccttcctgtagtgatgggacaaattgggagaatgctgtatctggtgaagaacgg
caaggtgatccctgggcaagcaagactgattgttctactaaaggcaaagaacaagaaact
gatccttgggcaagcaaggtggcttctactgcaggtgctgataataataaaaatggctgg
aacacaaaggaaaagggcaattcgactagttctggagctggggaaaaggaggacacttgg
aatattaaagggggcaatgggaatggtgggggttggaacaatactggttcttcggctgct
tggagcaaaccaagctctacaagtggagatcaggaacctgcttggagcaagccaacgtat
ggtgatgatgatactggatatggcaggggcggatttggacgtgggaatcgaggcagaggg
agaggaaggtttggtgatggtggatcttcatggaatggaggaagtaacttaaatgacgaa
tcaggtggagaaaggtctgaagatcgctggaacaggagggattctgatggtggcagagga
agaggcagaggacggtttggtcgaggtgatcgccatcaagataactttgggtcaggagat
ggtgatggtggtagctggagctctggcagaggaaacagaggccgaggtggtggttacaga
aactggaatgacaacaatgagggaaggtccttcagtcaaggtcgaggcggtggctggtct
cagtcttctgactggaatgccggtaaaaaggaaagcactgaaggagatcaagatttctca
aagggcaagtcaagctggggtggtgacaaaaatgatagctggggagggccaaaacagtct
ggtggagatgatcaggctggaaagagcgatgggagtaacgcctggaatcagaacaaacca
tctttgggtgatggatcctctgtcctgggtcagtggggtggtccttctggggacactacg
acttctagaggaggatctgtaggcgggggaggatcttgcggtaatagtgaaaatcaagct
ttctcgaaaggcaagtccaactgggggagtgacaaaaatgattgctggggagcgccaaaa
ccacatggtggagatgatcaggcaggaaagaatgatggaaataactcctggaaccaaacc
aaaccatctctgggtgatggaccttctatccttggtcagtggggtggaggggcacctgta
ggtagtggggtaaagagcaatgaagatggctggaattcatcaaagggaactgaaggtgga
acaaagaaggaaggatcttgggggaagcctggagggagcgggagcggttgcggtagccaa
ggaggcggtggcagttcctgggacaaggggaatgccggtggatggaacagcaacaagggt
ggtgataccagcaagggtggtgggtggtaa
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