Brachypodium distachyon (stiff brome): 100838725
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Entry
100838725 CDS
T01717
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100838725
09122 Translation
03013 Nucleocytoplasmic transport
100838725
03015 mRNA surveillance pathway
100838725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100838725
03041 Spliceosome [BR:
bdi03041
]
100838725
03009 Ribosome biogenesis [BR:
bdi03009
]
100838725
03012 Translation factors [BR:
bdi03012
]
100838725
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100838725
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100838725
mRNA cycle factors
Stress granule specific factors
100838725
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100838725
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
90S particles
Helicases
100838725
Translation factors [BR:
bdi03012
]
Eukaryotic type
Initiation factors
eIF-4
100838725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA
AAA_30
AAA_19
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-GeneID:
100838725
NCBI-ProteinID:
XP_014757972
LinkDB
All DBs
Position
4:complement(39849110..39852296)
Genome browser
AA seq
401 aa
AA seq
DB search
MAAATMPRASTSRRGRGMATSRGVEVVTSFEEMGLREEVLRGIFEYGYENPSAIQQRAIL
PIISGRDIIAQAQSGTGKTSMISLAACQMVDTTVREVQALILSPARELASQTERVIQAIG
QFMSIRVHACVGGNSVGEDIRKLEHGVHVVSGTPGRVCDLINRRTLRTRAIKLLVLDEAD
DMLERGFKSQIYDIYRYLPPDLQVVLISATMPAEILEITSKFMTDPVRILVKRDELTLEG
IKQFFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKIKVDWLTERMRRNNFTVSSMHGD
MPQKERNAIMADFRSGATRVLITTDIWARGLDVQQVSLVINYDLPSDRELYIHRMGRSGR
FGRKGVAINFVREIDITILRDIEQFYSAQIDEMPMNVADLI
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgacgatgccgagggcttccacgtcccggcgcggccgcgggatggcgacc
tcgcggggcgtggaggtggtcaccagcttcgaggagatggggctccgcgaggaagtcctc
cgcggcatcttcgagtacgggtacgagaacccctccgccatccagcagcgggccatcctc
cccatcatcagcggccgcgacatcatcgcccaggcgcagtccgggaccggcaagacctcc
atgatttcgctcgccgcctgccagatggtcgacaccacggttcgcgaagtgcaggcattg
atattgtcaccagcgagggaacttgcttcacagacagagagagtaatccaggctattggt
caattcatgagcatacgagtccatgcttgtgttggtggaaacagtgttggcgaggatata
agaaagcttgagcatggagtgcatgttgtgtcaggaacgccaggcagagtctgtgatctg
atcaatagaaggaccctgcgtacaagagccatcaagctcctagttctggatgaagctgat
gacatgcttgagagagggtttaagagtcagatatacgatatctacagatatctcccccca
gaccttcaggttgttttgatctctgcaactatgccggctgaaatcttggagataactagc
aagtttatgactgatccagttaggatccttgtaaagcgtgatgagctgactttggaggga
atcaagcaattctttattgctgttgagaaagaggaatggaagtttgatacactttgtgac
ctttatgatacactcacgatcacccaagctgtcattttctgcaatactaagattaaggtg
gactggctgactgaaagaatgcgccgcaacaacttcaccgtatcatctatgcatggtgac
atgcctcaaaaggaaagaaatgccatcatggctgacttcaggtctggtgcaactcgtgtt
ctaatcacaaccgatatttgggctcgtgggctggatgttcagcaggtctctcttgtcata
aactatgatctcccgagcgatcgcgagctttacatccatcgcatgggtcgttctggtcgg
tttgggcgcaagggtgtggcgatcaattttgtccgtgagattgacatcacgatactgaga
gatatcgagcagttctacagcgcacaaattgatgaaatgccaatgaatgttgcggatcta
atctga
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integrated database retrieval system
