Brachypodium distachyon (stiff brome): 100838784
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Entry
100838784 CDS
T01717
Name
(RefSeq) DNA excision repair protein CSB
KO
K10841
DNA excision repair protein ERCC-6
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
100838784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bdi03036
]
100838784
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100838784
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
100838784
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
100838784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_34
Motif
Other DBs
NCBI-GeneID:
100838784
NCBI-ProteinID:
XP_010230474
UniProt:
I1HC58
LinkDB
All DBs
Position
2:complement(2616719..2622270)
Genome browser
AA seq
1207 aa
AA seq
DB search
MEEDDDDQRLLHSLGVTSANIDDIERKILSEAKTDPKHDTESCVLADGDQETLQGDPQAK
LHQKLRSVQLEIDAVASTIGGAKPTVGKKSRGLDSADAEDKKKGKRKENADGIAQDAPHR
GALQQALAAERLRSLKRAKAQIQRDILQSDSGPSSSGNQTDKMLAMLVEEEPRRKKKSLM
PPRGPKVKSPRRLKTVTYNDDNDFDAVLDGASAGLMETEREELIRKGLLTPFHKLKGFEK
RVERPGPSGRQHNSAEQTEETMEASSIAKVAQAMQKMAQNRPTTKLLDPESLPRLDAPTA
PFQRLGMPLKRPASPSSDKQGNKRQKSKTKRPLPGKQWRKANSRKESLFDDEDVGDTAAS
ASENEDEVIEGSDGLPPVILEGGLRIPGSIYTQLFDYQKVGVQWLWELHCQRAGGIIGDE
MGLGKTVQVLSFLGSLHESGMYKSSIVVCPVTLLEQWRREASKWYPKFKVEILHDSANGS
SKKAKRSSDSESDFCSDSDQEEVTRAKPAKKWDALISRVVNSGSGLLLTTYEQLRIMRDK
LLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP
GKLGVLPVFEIEFSVPIKVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQL
PKKTEHVLFCSLTPEQRATYRAFLASSEVEQIFDGNRNSLYGIDVLRKICNHPDLLEREH
AAQDPDYGNPERSGKMKVVEQVLKVWKDQGHRVLLFAQTQQMLDILENFLTACDYPYRRM
DGLTPAKQRMALIDEFNNTDEIFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQAR
ERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVLKNPQQRRFFKARDMKDLF
TLQDEDMNGSTETSNIFGQLSEDVHIRAPNDEQRSELSSALPTSTEAEPCSSGRGKGKVD
PNSDQADEESNILKSLFEAQGIHSAINHDAIMSANDDQKVREEAEASQVAQRAAEALRQS
RMLRSRDSFAVPTWTGRAGAAGAPSSVRRKFGSTLNSQLVSSSQPSGSPNSKVQSLQVGA
LNGKALSSAELLAKIRGTREGAASDALEHQLSTGPASNQISGPSVNGRVTNSSGRNNMIV
QPEVLIRQLCTFIQQNGGSASSTSLTEHFKNRIQPKDMLVFKNLLKEIATLQRGASGASW
VLKPDYE
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagacgacgatgaccagcgcttgctgcacagcctcggcgtgacgtccgccaac
atcgacgacatcgagaggaaaatcctatcagaggcgaaaaccgaccccaagcatgacact
gagtcgtgcgtgctggccgacggtgaccaggagacgctgcagggtgatcctcaggccaaa
ctgcaccagaaactgcgttccgtgcagcttgaaattgatgccgtggcatccaccatcgga
ggggctaaacccacagtcgggaagaaaagccgtggattggacagcgccgatgcagaggat
aagaagaaggggaagaggaaggagaatgctgatggtattgctcaagatgcccctcataga
ggagcactccagcaagcgcttgccgccgaacgccttaggagcctcaagagagctaaagca
cagattcagagggatatcttgcagtcggactctgggccgtccagctcaggtaaccaaacg
gataaaatgttggccatgctggttgaagaggaaccgaggcggaagaagaagtcgctaatg
ccgcctagagggcctaaagtgaagtcgccacgtcggttgaaaaccgtcacttataatgac
gacaacgactttgatgcagtgcttgatggagcttctgctgggttgatggaaaccgaaagg
gaagagcttattaggaagggtttgctgacaccatttcacaagttgaagggctttgagaag
cgcgttgaacgacctggaccttctggcagacaacataattctgcagaacagactgaagaa
accatggaagcttctagcattgctaaagttgctcaggcaatgcagaagatggcacaaaat
cgcccaactaccaaattgcttgatccagagtcgttgcctaggctggatgcacccactgct
ccatttcaaagacttggaatgcctctaaaacgccctgcgtctcccagttcagacaagcag
ggcaataaaagacaaaagagtaagaccaagaggccattgcctggtaagcaatggaggaaa
gccaactcaaggaaggaatcattattcgatgatgaggatgttggagatacagctgcatca
gcttctgagaacgaagatgaagtaatagaaggttctgatgggttacctcctgtcatcctt
gagggtggtttaagaattcctggctcaatttacacgcagctgtttgactaccaaaaagtg
ggggtgcagtggctatgggagttgcattgtcaaagggctggtggaataattggcgatgaa
atgggcttaggaaagaccgtgcaagtcttatcatttcttggttctttgcatgaaagtggc
atgtacaagtccagtattgttgtttgtcctgtgacacttttggaacagtggcgaagggag
gccagtaagtggtatccgaaattcaaagttgagatcttacatgattctgcaaacggttca
agtaaaaaggccaagagatccagtgactctgagagtgatttttgttcggatagcgaccag
gaagaggttacccgtgcaaagcctgcaaaaaagtgggatgccttgatttcacgtgttgta
aattcagggtcaggtttgcttctgactacatatgagcagctaagaatcatgcgggataag
ttgcttgatatagaatggggatatgctgtattggatgagggtcaccgcataaggaatccc
aatgctgaagtaactctggtgtgcaagcaactgcagactgtgcataggataattatgaca
ggtgcgcctatccagaataaactctcggaactgtggtctctctttgattttgtgttccct
ggaaaattaggcgtcctgcctgtgtttgagattgagttttctgttccaattaaggtcggc
gggtatgctaatgcaacaccattgcaagtgtccactgcatatagatgtgctgttgtcctg
cgtgacttgattatgccgtatcttctcaggagaatgaaagctgatgtcaatgcacagctt
cccaaaaaaacagagcatgttcttttctgtagtttaactcctgagcaacgtgctacttat
cgtgcatttcttgctagttcagaagtggaacaaatatttgatggtaacagaaactccctt
tatgggatagatgtcctaaggaagatatgcaatcatcctgatcttcttgagagagaacat
gctgctcaggatcccgactatgggaatcctgaaagaagtggaaagatgaaagtggttgag
caagtccttaaagtctggaaagatcaaggccatcgggttcttctttttgctcagacgcaa
cagatgcttgacattttagagaacttcttgactgcctgtgactacccatatcgaagaatg
gatggactcacacctgcaaagcaaagaatggcactcattgatgagttcaataacacagat
gaaattttcattttcattctgaccacaaaagttggtggattgggtacaaatttgactggt
gcgaacagggttattatatttgatcctgactggaacccttcaacagacatgcaggctagg
gaacgagcatggcgaattgggcaaaccagagatgtgacagtttacagattgatcacacgt
gggacaatagaggagaaagtctaccatcgacagatatacaagcatttcctcacaaacaaa
gtactgaaaaatcctcaacaaaggagattctttaaggccagagacatgaaggatttgttc
acattgcaagatgaggacatgaatggttcaacggaaacatcaaacatttttggtcaatta
tctgaagatgtgcatatcagggctccaaatgacgagcagcgaagtgagttatcttcagct
ttaccaaccagcacagaggctgaaccttgttcgtcgggtaggggaaaagggaaggtggac
cctaattctgaccaagcagatgaagaatccaacattctgaagagtctttttgaagctcag
ggaattcatagtgcgataaatcatgatgccataatgagtgctaacgatgatcagaaggtg
cgtgaagaagcagaagcttcacaggtggcacaaagggcagctgaagctttacggcaatca
cggatgctcaggagccgtgacagttttgctgttcccacgtggactggaagagctggtgct
gctggtgcgccatcctctgttcgcaggaaatttgggtcaacactgaacagccagttggtt
agttcttcgcagccatcaggaagtccgaacagcaaggttcaaagtcttcaggtgggtgct
ctaaatggcaaagcactgtcctctgccgaactgctggctaagattcgtggaacgcgagag
ggagcagcttcagatgcattggaacatcagcttagcacgggaccggcttccaaccaaatt
tcaggtccatcagtgaacggtcgcgtgactaactcttccggtaggaacaacatgattgtg
caacccgaagtcctgatccgccaactgtgcaccttcatacaacagaacggtggttctgcc
agctcaacgagcttgacagagcatttcaagaaccgtatacagcccaaggatatgcttgtg
ttcaagaacctgctgaaggagatagcaaccttgcaaagaggcgcgagcggtgcttcgtgg
gtgcttaaacctgattatgagtaa
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