Brachypodium distachyon (stiff brome): 100838800
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Entry
100838800 CDS
T01717
Name
(RefSeq) endoribonuclease Dicer homolog 3b isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bdi03036
]
100838800
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100838800
microRNA pathway
RISC loading complex
100838800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
dsrm
DND1_DSRM
SWI2_SNF2
AAA_22
MerR_2
Motif
Other DBs
NCBI-GeneID:
100838800
NCBI-ProteinID:
XP_014755751
UniProt:
A0A0Q3IA57
LinkDB
All DBs
Position
3:31008850..31020878
Genome browser
AA seq
1621 aa
AA seq
DB search
MAAAADDPMPPPPLPPPRRPHKQLNPRRYQVEVFEAALVGNTIAVLDTGSGKTMVAVMLA
REHVRRVRAGEAPRRTVVFLAPTVHLVHQQFEVISEYTDLDATECYGASGVGGWSAEHWK
EEVGSKEIAVMTPQILLDALRHAFVTMSVVSLLILDECHRACGNHPYTQIMKEFYLGSQW
RPAVFGMTASPVATKGTSTIQDCEAHIAQLELALDSKVYIIKDRSELESFSPPATIVNKY
YDAYLVDFEDLKSKLQILFEEFDALLVSLQESSPNKFEDTNNILETSRKSLCRYHGKILY
GLNYLGPIITAEVVKIYSESIKALGDSEDCFSKAGFNLHVSYFKEALDLIQEVLPQGYDE
LMKSESGSAELSKRGYISSKVDTLINIFKSFGSSNEVLCLIFVERIMTAKAVERFMRGIV
NFSRFSISYLTGGSTSKDALSPAVQQFTLDLFRAGKVNLLFTTDVTEEGIDVPNCSCVIR
FDLPRTVSSYVQSRGRARKSSSNYVLMIERGNMEQQEQIFRIIQTEYYIKHFALYRRANV
SSYDLPMQDKHTYHVDSTGATITAECCVNLIRKYCEKLPKDRYYMPKPSYEMAVEDGSYQ
CTLILPPNAAFQRIIGPSCSTGNLAKQLVSLEACKKLHQLGELDDHLVPLTEGPMDIGNS
RTNEKCISGPGTTKRKELHGTTSVLALTGTWTHESENVSLNAYRFDFRCDQEGENYAGFV
LLMESALDDDVACSKMDLFLIPNKMVYTTITPCGKIQLNKKQLREGKLFQEFFFNGIFGR
LFHGSRTSGVQREFIFRKGYEIQWSSESMYLLLPLCYSSHIQHDLSINWEAIGFCTDALE
QLRNMYTEDGNLHANFIQCRSIKGEDMIHMANKSLRVSSIKDSVVLSLHTGRIYSVLDLI
IDTTAEDSFDEMYNGKASTFASFVDYYHEKYGIIIRHPKQPLLLLKQSHNAHNLLFSKLK
YIDGPTGNPLLMEKEQIHARVPPELLIHIDVTIEILKSFYLLPSVMHRLQSLMLASQLRG
DIGYIQHIPSCLILEAITTLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLS
DMRSKAVCNAKLHKHGVWRSLQGYIRDSAFDPRRWVAPGQISLRPFPCNCGIETSFVPTN
GMYIRDDPSFVVGKPCDKGHRWMCSKTISDCVEALVGAYYVGGGIIAALWVMRWFGIEIK
CDRKLVQEVKLNASYICYLPKTNDIDELEVKLKYNFSVKGLLLEAITHPSAQESGVDYCY
QRLEFLGDCVLDLLITQYLYVTHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHG
SGVLLEQITEYVRFNLECQGKENEFLQHSTCKVPKVLGDIMESIAGAIFIDTDFNVDLLW
NIVEPLLSPMITPENLALPPYRELLELCSHLGYFINSKYSSKGEEVIIEMSVQLRDELLV
AQGHDSNKKSAKAKAAARILADLKKRGLSIKQCFSMYKQLDIISSDLQFNLTSLESPLDY
NDVNDNPSIKGFSSQKEAVVVTLKMDKGGPRSVLFKLCKRLQWPMPEFEFVEQRFRTPIV
LDGVTTTNFNSFVSTITLHIPDVTAITLQGERRTDKKSAQDSASLIMLHELQCLKVCICK
T
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgccgacgatcccatgcccccgccgccgctgccgccgcctcgccggccc
cacaagcagctcaacccgaggaggtaccaggtggaggtgttcgaggcggcgctggtgggc
aacaccatcgcggtgctcgacacggggtccgggaagaccatggtggccgtcatgctcgct
cgcgagcacgtgcgccgcgtgcgcgccggggaggcgccgcgccggaccgtagtgttcctc
gcgcccaccgtgcacctcgtccaccagcaatttgaggtgattagcgagtacacggacctt
gacgcgacggagtgctacggagcgtcgggggtcggtgggtggagtgccgagcactggaag
gaggaagtagggagtaaggagattgctgttatgacaccacagatattattggatgctctg
aggcatgcttttgtaacaatgagtgtagtgagcttgctaatattagatgaatgccatcgt
gcctgtggaaaccatccatatacacagataatgaaggaattttaccttggctctcagtgg
aggccagctgtatttggaatgactgcatctcctgttgctacgaaaggaacctccacaatt
caagattgcgaagcacacattgctcaacttgaactagcattggattctaaggtatatatc
ataaaagatcggagtgaacttgagagcttttcccctcctgcaacgattgtgaacaaatat
tatgatgcttacttggttgattttgaagatttgaaatcaaagctacagatattgtttgaa
gagtttgatgctctgttggttagtctgcaagaatcatcaccaaacaaatttgaagacacc
aataacatattagagacatcaagaaagagcttgtgcagataccacgggaagatattgtac
ggactaaattatcttggtccaatcatcacagctgaggtagtgaagatctatagtgaaagc
attaaggcattgggtgattctgaagattgcttctctaaagctggcttcaacctgcacgtg
tcttattttaaagaagctttagatttgatacaggaagtgctgccacagggttatgatgaa
ctaatgaaatcagaatctggttctgcggaattaagtaaaagggggtatatttcttcaaag
gtggatacactaatcaacatttttaaatcatttgggtcatcaaacgaagtgctgtgccta
atttttgtagaaagaattatgacagctaaagctgttgaaaggttcatgagaggaattgtt
aatttctctcgtttttcaatctcttacttgactggagggagtacatcaaaagatgctctc
agcccagcagtgcagcaatttactttggatctgttccgagctggaaaggtaaatttgctt
ttcacaactgatgtgactgaagagggtattgatgtacctaactgctcttgtgtcatacgc
ttcgacctgcccagaactgtttctagctacgtccaatctcgcggtcgtgctagaaagagc
agctcaaattatgttcttatgattgagaggggaaacatggagcagcaggaacaaatattt
cgtataatacagaccgagtactatattaaacattttgctctgtatagacgtgccaatgtt
tcatcctatgatttgcctatgcaagataagcacacataccatgttgattcaacgggagca
actataactgcagagtgctgcgtcaacctaattcgtaaatactgtgagaaacttcctaaa
gataggtattacatgccaaagccttcctatgagatggctgtcgaagatggatcatatcaa
tgtaccttgattctacctcccaatgcagcatttcaaaggataattggcccttcatgcagt
acaggcaatttagccaagcagcttgtatctctagaggcatgcaagaagttgcatcagctg
ggagaacttgatgatcatcttgtacccttgaccgaaggtcctatggatattggtaattct
agaaccaatgaaaaatgcatttctggaccaggaacaactaaaagaaaggagctccatgga
acaactagtgttcttgctctgacaggaacttggactcatgaaagtgaaaatgtctctctg
aatgcttacagatttgattttcgttgtgaccaagagggcgaaaactatgctggatttgtt
ctcttaatggaatcggcacttgatgatgatgtagcatgttcaaaaatggatctcttcttg
atccctaataaaatggtctacactaccataacgccttgtggaaaaattcaactgaacaaa
aagcagctacgtgaagggaagttgttccaagaattctttttcaatggaatatttggcaga
ttattccatggttcccggacaagtggagtgcagagggaatttattttcagaaaaggttat
gaaatacaatggagctcagagagcatgtacttacttttacctttgtgttattcgtcacat
atccagcatgatctaagcataaactgggaggcaattggattctgcaccgatgcactggag
cagttaagaaatatgtatactgaagatggaaacctccatgcaaattttattcaatgtaga
agtatcaaaggagaagacatgattcatatggccaacaaatctctacgtgtttccagcatc
aaagattcagttgtgttatcacttcatactgggaggatatactctgttcttgacttgatc
attgacacaaccgcagaggactcatttgatgagatgtataatgggaaagcttcaacattt
gcttcattcgtggactactaccatgaaaagtacggtattattattcgtcatccaaaacaa
ccattattgctgttgaagcaaagccacaatgcacacaatcttcttttttcaaaattaaag
tacatagatggtcctactggaaatcctctgctcatggaaaaagagcaaatacatgctcgg
gtcccacctgaactgctaatacacattgatgtaacaattgaaattctcaaatcattttat
ttattgccttctgtaatgcatcggcttcagtctctcatgctagccagccagcttcgtgga
gatattggttacattcaacacataccaagttgtctgattttggaagctatcacaacttta
aggtgctgtgagacattttccctggagcgtttagaattattaggagactcagtactaaaa
tatgtgataggatgtgacctatttttgagatatcctatgaaacacgaaggtcatctttct
gatatgagatccaaggcggtctgcaatgccaaacttcataaacatggagtatggcgatcc
ttgcagggttacatacgggatagtgcatttgacccacggcgttgggttgctcctggacag
atatcactgcgcccttttccttgtaactgtggaatcgagacttcatttgttccaactaat
ggaatgtatatcagggacgacccatcttttgttgtgggaaaaccatgtgacaaaggtcac
agatggatgtgctcgaaaacaatatctgactgtgttgaagccctagttggagcatattat
gttggtggtggcatcattgctgcactttgggtaatgaggtggtttggtattgaaataaaa
tgtgataggaagttagtgcaggaagttaagcttaatgcatcatatatatgctacttaccg
aaaacaaatgatattgacgagttggaggtaaaactgaagtacaacttctcagtcaagggc
cttctactggaagccataactcatccatctgcgcaggaatctggggttgactactgttac
cagcgtctggaatttctgggtgattgtgtgctggatctactaatcacacagtatctatat
gttacccatactgatgttgatcctggagaattgacagacttgcgttctgctttggttagt
aatgagaattttgcacaagcagttgtaagaaacaacattcacagtcatctgcagcatggg
tctggagtacttttagagcaaattacagaatatgttaggttcaatttggagtgccaagga
aaggagaatgaattccttcaacattctacatgtaaagtacctaaggtacttggggacatc
atggagagcatcgccggcgcaatattcatagatacagattttaatgttgatctgctttgg
aatattgttgaaccgttgctttctccaatgataactcctgagaaccttgcattaccacct
tatcgtgagttgctagagctatgtagccaccttggttatttcataaattcaaaatacagt
agtaaaggagaagaagtaattatagagatgtcagttcaattaagagatgaactactggta
gcccaaggacatgacagcaataagaagagtgcaaaggcaaaggcggctgctcgtatcttg
gcagatctgaagaaacgtggcctttcaatcaaacaatgtttctccatgtataagcagttg
gatattatatcttcggacttgcagtttaacttgacgagtttagaatcaccacttgattat
aatgatgtgaatgacaatcctagcataaaaggtttttcctcacagaaagaagcagtagtt
gtcacgctcaaaatggataaaggtggaccgcgaagcgttctttttaagctatgcaagagg
ctgcagtggccaatgccagaattcgaatttgtggaacaaaggtttaggactcctattgtc
ctggatggggtaactacaaccaacttcaatagcttcgtttcaaccatcaccttgcacata
cctgatgtaaccgccattacccttcaaggtgagcgacgaactgacaaaaagagtgcccag
gattcagcatcgttgataatgcttcacgagcttcagtgtctcaaggtctgtatatgcaag
acttag
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