Brachypodium distachyon (stiff brome): 100838839
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Entry
100838839 CDS
T01717
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100838839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100838839
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100838839
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100838839
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100838839
NCBI-ProteinID:
XP_003578122
UniProt:
I1IQ55
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All DBs
Position
4:35938841..35940248
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AA seq
279 aa
AA seq
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MTTPVEDKPDDVEIREVWAENLEAEFAVIREIVDDYPYVAMDTEFPGVVCRPLGTFKSAA
DFNYATLKANVDMLKLIQLGLTFSDERGGLPALGPGGRPCVWQFNFRGFDPRTDVAAADS
IDLLRRSGIDFARHAADGADSRRFAELLMSSGVVMNAEIHWVTFHSGYDFGYLLKLLTGT
NLPDTNSGFFDLIRIYFPVIYDIKHLMRFCNSLHGGLNKLAELLDVERVGICHQAGSDSL
LTALSFNKLKESYFGGLTEKYAGVLYGLGTEGGETTSVH
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgccggtcgaagataagccagacgatgtggagattcgcgaggtgtgggcggag
aacctcgaggccgagttcgccgtgatccgagagatcgtcgacgactacccgtatgtcgcc
atggacacggagttccccggcgtggtctgccgaccactggggaccttcaagtccgccgcc
gacttcaactacgccacgctcaaggccaacgtcgacatgctcaagctcatccagctcggt
ctgaccttctccgacgagcgcggcggcctccccgccctcggtccgggcggccgcccctgc
gtctggcagttcaacttccgagggttcgacccacggaccgacgtcgccgccgcagactcc
atcgatctgctacgccgcagcgggatcgacttcgcccgccacgcagctgacggcgccgac
tctcgccggtttgccgagctgctcatgtcgtcaggcgtcgtcatgaacgctgagatccac
tgggtgaccttccatagcggctacgatttcggctacttgctcaagctgctcactggcacc
aacctgccggacaccaattctggcttcttcgatctcatcaggatatacttccctgtgatc
tacgacatcaagcacttgatgagattctgcaatagtctccacggtggactgaacaagctc
gctgagctgctcgatgtcgagcgggttggaatctgccatcaggctggttccgactctctg
ctcaccgcactttcgttcaataagctcaaggagtcatacttcggtgggttaactgagaaa
tatgccggtgtgttatatggtctaggaacagaaggtggggagaccacctctgttcactga
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