Brachypodium distachyon (stiff brome): 100838876
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Entry
100838876 CDS
T01717
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100838876
03015 mRNA surveillance pathway
100838876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100838876
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100838876
5.6.2.5 RNA 5'-3' helicase
100838876
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100838876
mRNA cycle factors
Common to processing body (P body) and stress granule
100838876
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
SRP54
PhoH
AAA_16
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
AAA
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
100838876
NCBI-ProteinID:
XP_003563076
UniProt:
I1GU88
LinkDB
All DBs
Position
1
Genome browser
AA seq
1267 aa
AA seq
DB search
MATQPPSSAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFEYPDFPELSQPARSAP
PPATVTSSTSSSWPAPPPPPDASQDPDLVPQDSTPLASSSSPSPRSSASKARASAAVADG
LAAGVAALSFEEPPGAGAGEDGYDYGKGDFVEHACRYCGIHSPACVARCNVPSCRKWFCN
SRGNTSGSHLVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAENVVV
LLCREPCLNVNALKDMNWDLSQWLPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINKVE
ELWKTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSK
DSVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGGTSHPAWQSVGHVIKLTA
QEEVALELRASQGVPVELSHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLG
HEVEHQIIRNTLPKRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAAIVY
HMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRH
LDTSEKSEMHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPRL
SNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLF
ERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSTGIDFPWPVPNRP
MFFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVN
YMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTR
ARYGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRL
FLGGGQGVMHGSSFGTAGSVDKRSGRGKAHPFVPFGPPNGAHKPGVHPSYPLPRMPFPPF
PGSPHSQPYAIPTRGSLHGPIGAVPAVPQPGNRNFGAPRANTGPIGGHLAAHQQNSQQAM
GNVGPAYNFTGLENPSSQPSGGGPMSQPGLMTQMPVQGLSQTFRDGFAIGGMSQDFFGDD
FKSQGSHVAYNIADFSTQASQGGYGVEYTQGPQSGYPGNYLNQSAHPGYPHMGATNEIVS
QDHMAHGSHGMFTQAGYNDPSQDESSQMHYGMGAPGHLQSQSMMNPMYSQSYAHYNTQPQ
SLQPPPQ
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccttcctcggccgcggctgccgacctctacgagacggcctcgcag
cccgacccctcggcctccgccgccggggacgcctacaccttcctggagttcaacacgcag
ggcgacgacttcgagtaccccgacttcccggagctctcccagcccgctcgatccgcgccg
ccgccggccaccgtcacctcctccacctcctcgtcctggccggccccgcccccgccgccc
gacgcctcgcaagaccccgatctcgtgccgcaggactcgaccccgctcgcctcgtcgtcc
tcgccgtcgccgcggtcgtccgcgtccaaggcacgggcgtcggccgccgtggcggacggg
ctcgccgcaggggtcgcggcgctcagcttcgaggagcctcccggcgcaggagcgggcgag
gacgggtacgactatggcaagggcgacttcgttgagcacgcttgcaggtactgcgggatc
cacagccccgcgtgtgttgctcgctgcaatgtgccgtcctgccgcaagtggttctgcaac
tcacgggggaacacctctggctctcacctcgtcaaccacctggttagagcaaaacataag
gaagtttgccttcacaaggacagccctctgggtgaaacaatcctcgaatgctacaattgt
ggctgtcggaatgtattccttcttggttttatctcagcaaaggcagagaatgttgttgtt
ctactgtgtagagagccatgcttgaatgttaatgcactgaaggatatgaattgggatctt
agtcagtggcttcctctcattgatgacaggtgcttcttatcatggcttgtcaaggttccc
tcagaacaagagcagctgcgagcacgccaaattagtgcccagcaaattaacaaagtggaa
gagctctggaaaacaaatcctgatgcctctcttgaagatcttgaaaaacctggtgtagat
gacgaaccccagcccgtggttttgaagtatgaagatgcttaccagtatcaaaatgttttt
gctccattgataaagctcgaggccgattatgacaagatgatgaaagagtcacaaagcaag
gacagtgtaactgtgcggtgggatattggactgaacaagaagcgcgttgcctattttgtc
tttccaaaggaagataatgaattaagacttgtccctggagatgagctcaggctgagatat
tctggtggtacttcacaccctgcatggcaatctgtgggtcacgtgattaaactcactgca
caagaggaggtggcacttgagcttcgtgctagccagggcgtacctgttgaactgagccat
ggattcagtgtggattttgtttggaagagtactagctttgataggatgcaaggagcaatg
aagacttttgctgtagatgagacaagtgttagtgggtacatataccatcaccttttgggg
catgaagttgagcatcagataattcgtaatacactaccaaaacgctttggtgcaccagga
cttccagaactaaatgcttctcaggtcttggcggttaaaagtgttctccagaagccagtt
agtttgattcaaggtccacctggcactgggaaaactgtcacatcagctgcaattgtctac
cacatggcaaaacaaggtcaaggacaggtacttgtttgtgcaccaagtaatgttgctgtt
gatcagttggcagagaagataagctcaactggtctcaaggttgttaggctgtgtgcaaaa
tctagagaagcggtttcgtctcctgttgagcatctgacacttcattatcaggttcggcat
cttgatacttctgaaaagagtgaaatgcataagctacagcagctgaaagatgagcaagga
gaattgtcgagcagtgatgagaagaagtacaaagcactaaaacgagctactgaaagagag
atattacaaagtgctgacgtcatttgctgcacttgtgttggtgctggagatcctcgcttg
tcaaacttccgttttcgccaggttcttatcgacgagtctacacaggcaacagagcctgaa
tgtcttattccattggttcttggtgtcaagcaggttgttcttgttggggatcattgccaa
ttgggcccggtcatcatgtgcaaaaaggcagcacgtgcaggattagcacagtctctcttt
gaacgtcttgttatccttggagtcaagcccttcaggctacaagttcaatatagaatgcac
ccttgtctttcagaatttccttccaactgtttctatgaaggcacgctgcaaaatggagta
actgtaaatgagagacaatcaactggaattgattttccttggcctgttccaaatcgaccc
atgttcttctatgtgcagatgggagtagaagaaatcagtgctagtgggacatcttacctc
aatagaactgaagctgcgaatgttgaaaaaattgtaactacatttttaagaagtggtgtc
gtgccaagccagattggagttattacaccttatgaagggcaaagggcgtacattgtaaat
tatatgtcaaggaatggttctctccgccaacagctgtacaaggaaattgaggtagcaagt
gtcgactccttccagggaagagagaaagattacattattctgtcttgtgtgagaagcaat
gaacaccagggtattgggtttcttaatgatccacgcaggttaaacgttgcattaactcgt
gctcgttatggtatagtcgttcttgggaatcctaaagttctaagcaagcagcctctttgg
aatagcttgttgacacattacaaggagcacgagtgcttggtagaaggacctttgaacaac
ttgaagcagagtatggttcagtttcaaaagcccaaaaagatctacaatgacagaagactg
ttcctaggtggtggtcaaggtgttatgcatggatcttcctttggcactgcaggttcagta
gataagagaagtggtaggggcaaagcacacccctttgttccatttgggccgccaaatggg
gctcataaacctggtgtgcacccatcctatccgttaccccgtatgccttttcctccattc
cctgggtctccgcattctcaaccctatgcaattccaacccggggatcattgcatggaccc
attggagctgttccagcggtgcctcagccgggtaatagaaactttggggctcctcgtgca
aatactggccctattggtggccaccttgctgctcatcaacagaactctcagcaagctatg
ggtaatgtggggccagcttataactttactggcttggagaatccaagcagtcagccttct
ggtggaggtccaatgtctcaacctgggctgatgacacagatgcctgtccaaggtcttagt
caaacatttcgtgatgggtttgccattggtgggatgtctcaggacttctttggagatgat
ttcaagagccaaggatctcatgtggcatacaacattgcagatttttccactcaggcttct
caaggaggttatggtgttgaatatacacaaggcccccaatctggatatcctgggaattat
ttgaaccaaagtgcacatccaggatacccccatatgggcgcaacaaatgaaatcgtatct
caggatcacatggctcacggttcacatggcatgtttacacaagcgggatacaatgaccca
tcacaagacgagtcttctcagatgcattatggaatgggtgctcctggccatcttcaatcg
cagagcatgatgaatcctatgtactctcagtcgtatgcgcactataacactcaaccccaa
tcccttcaacctccgccgcagtga
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