KEGG   Brachypodium distachyon (stiff brome): 100839312
Entry
100839312         CDS       T01717                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100839312
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bdi03021]
    100839312
Enzymes [BR:bdi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100839312
Transcription machinery [BR:bdi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     100839312
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_4 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 100839312
NCBI-ProteinID: XP_003571431
UniProt: I1I174
LinkDB
Position
3:14102967..14112405
AA seq 1242 aa
MEEPQANDLQSPNGSDIELDVVDFIALDYDGDAKCHIKQDAKGEQQPLADADGGLSPMNV
DLKGIPSLEDEREVMSSSDPCVQAPIDFNVATLEKFCKEAARSFFSETGLVSHQINSYND
FISHGLQELIDSVGEITVEPDYDPSKKAEAGAWRHATIKFGRVKFEEPVFWVEDTELDEH
TLKLKPKHARLQNMTYSSKMFVEMTVQVYSLMQSDKSKIGKNPYIQKRDILNETKWVSIG
RLPVMVKSNLCWLHKLQKTDCQFDYGGYFLIKGMEKAFVAEEQRCLSRIWIKDHPSWDAS
YMSQNKRERIYVKLVQSEESHGLRKLVRLFFLGATMPIWIMFFALGVSSDKEAFDMIDIQ
DCDASLVNIISATIKESDEQCEGFRRGGRARQYVDEFIKKTKFPPEQSFDGYVGRYMFPG
DVSDNRSKAFFLGYMVKCLLMAYSGHRKCDDRANFRNKRLDLACQLLRRELWVHLRHAQR
RMVKIMQRHLSGDGDLQVLDHYVDTSIVTNGLNRAFSTGSWCHPYKYERCSGIVGNLRRT
NPLQMMSDLRKTRQLSAYFGNAGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAVTAVVS
SVMRKPLMDLFVSCGMKKLNEVRVQELHGTDKTFLNGNLIGVCANPGEFVTHLRNMRRSN
KIDRQVEIKRDMQHKEVRVFSDAGRILRPLLIVENLKSMTTIKQKNGSYSFQELVDKNII
ELIGVEEEEDIRCACAIRDLFSGDNEEGFLYYTHCELDPSFLLGLSCGIIPFANHNNARR
VLMQAEKLSQQAIGYSSTNSQYRVDTLFHQMYYPQKPLFKTVVADCIGKSDHNFGEEDDF
TRPENFPYFNGQNAIVSISVHQGFNQEDSLVFNRGSLERGMFRTQHFKSYKTQIENKEVT
RRLKYREKIDFGKTQSKRGRVDSLDIDGLPYIGASLQSGDIVIGKVSESGEDHSMKLMHT
EKGMVEKVVLSANDDGKNSAVVTLRQVRSPCVGDKFASMHGQKGVVGLLDSQENFPFTFQ
GIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGGMTRYATPFTTPSVDVITEQLHKAGF
SRWGGESVLNGQNGERMQSLVFMGPAFYQRLHHMAVDKVKLRNTGPVHPLTRQPVEDKKR
FGGVKFGEMERDCLLAHGATANVHERLFRVSDLSEMHICQACQRVANVILRSEGGKKVHG
PYCGFCKSAENILRVNVPYGASLLYKELFCMGICLKFETEVI
NT seq 3729 nt   +upstreamnt  +downstreamnt
atggaagagccgcaagcgaatgacctgcagtcaccaaatgggtcagatatcgagttggat
gtcgtggatttcatagctttggattacgacggagacgcaaagtgccatataaaacaggat
gcaaaaggggagcaacagccacttgctgatgctgatggagggctgtctcctatgaatgtg
gatttgaaaggaataccatctttggaagatgaaagggaagtaatgtcttcttcggaccca
tgtgtgcaagccccaattgacttcaatgttgcaaccttggagaagttctgcaaagaagca
gcaagatcattcttcagcgaaactggactagtcagccatcagataaattcctacaatgac
ttcatctcccatggactccaagagctcattgattctgtaggggaaattactgttgagcct
gattatgatccttcaaagaaagcagaagcaggtgcttggaggcatgcaaccatcaagttt
ggtagagtgaagtttgaggagccggtgttttgggttgaagacaccgaactcgatgagcac
acgctcaaactgaagcctaaacatgctcgcctccagaacatgacatactcttctaagatg
tttgtagaaatgactgttcaggtttattcactcatgcaaagcgacaaatcaaaaatcgga
aagaatccatatatccagaagagagatatattgaatgaaactaaatgggtcagcattggt
aggttacctgtcatggtgaagtcaaatttgtgctggctgcataaacttcagaaaactgac
tgccagttcgattatggtggatactttctaatcaaaggaatggaaaaggcctttgttgct
gaagagcagagatgcttatccaggatttggatcaaggaccaccccagctgggacgcctct
tacatgtctcaaaacaaacgagaaagaatttatgttaagcttgttcagtctgaagagagt
catggtttgcgcaaactcgttagattgttcttcttgggtgcaactatgccaatatggata
atgttttttgcactaggtgtatcatcagataaggaagcttttgatatgattgacatacaa
gattgcgatgcttctttggtcaacataatatcagcaactataaaggaatctgatgaacaa
tgtgaaggcttccgcagaggaggtagagcccgccaatatgttgatgagtttataaaaaaa
acaaagtttccgccagaacaatcctttgatgggtatgttggtaggtatatgtttcctggt
gatgtcagtgacaataggagcaaagcatttttcttgggttacatggtgaaatgtctgcta
atggcgtactctggccatagaaaatgtgacgatagggcgaacttccgtaacaagaggcta
gatctagcatgccagctgcttcgtagagaactttgggtgcatcttagacatgcacagaga
cgtatggtcaagatcatgcaaaggcatttgagtggtgatggtgacttgcaagttcttgat
cattatgtggatacgtcaattgttaccaatggtctgaaccgtgccttctccaccggttcc
tggtgccatccatataaatatgaaaggtgctcaggaattgttggaaaccttaggagaaca
aatccacttcaaatgatgtccgacttgaggaagacacggcagttgtctgcttattttgga
aatgctggagatgctagatatccgaatccatcttactggggtaagttgtgttttttgtcc
actcctgatggtgaaaaatgtggatttgtgaaaaacctagctgttactgctgtggtcagc
tctgtgatgcggaagcccttgatggacttatttgtttcttgtggaatgaagaaactgaat
gaagttcgtgtacaagagcttcatggtacagacaagaccttcttgaatggaaatttgatt
ggagtgtgtgcaaatccaggtgaatttgttacgcatctaaggaatatgagacgtagcaat
aaaatagatcgacaggtggaaatcaaaagggacatgcaacataaagaagttcgtgtcttt
tctgatgcagggagaatcctaagaccacttcttatagttgaaaatcttaaaagcatgaca
actataaagcagaagaatggatcatactcatttcaggaacttgtggataaaaatataatt
gagctgattggtgttgaagaggaggaggatatccgatgtgcttgtgcaattagggatctc
ttttcaggagacaacgaagagggttttttgtactatactcattgtgaacttgatccttct
ttcttgctagggttgagttgtggtatcattccctttgccaaccacaataatgctcggagg
gttttgatgcaagctgaaaagctatcacaacaggctattggctactcgtctacaaattct
cagtacagagttgataccctttttcatcaaatgtactatccacagaaacccctgttcaaa
actgtagtggccgactgtattggtaagagcgaccacaactttggagaagaagatgacttt
actagaccagaaaatttcccatatttcaatggccaaaatgcaatagtctcaatcagtgtt
catcagggttttaaccaagaagactccctggtatttaataggggttctttagagcgtggc
atgtttcggacacaacatttcaagagctataaaacacagatagaaaacaaagaggtgacc
aggcgactcaaatacagggagaaaattgattttggaaaaacgcaaagcaagagaggccgg
gttgacagtctggatatcgatggcttaccatatattggagcaagccttcaaagtggtgac
attgtcatcgggaaggtctcagagtctggtgaagatcatagcatgaagcttatgcatact
gaaaaagggatggtggagaaggtagttctttcagccaatgatgatgggaagaactctgca
gttgttactctaagacaggttcgctcaccttgcgttggagacaagtttgcaagtatgcat
ggacagaaaggagttgttggtcttttggattctcaagagaacttcccatttactttccaa
ggaatagttccagatattgtgataaatccgcacggctttcccactcgtcaaactcctggt
cagctgcttgaagctgcgttgggtaaggggattgcccttggtgggatgacccgatatgca
acaccatttaccactccatctgttgacgtgatcacagaacaattgcacaaagctggtttt
tcaaggtggggaggtgagagcgttctgaatggacaaaatggtgaaaggatgcaatccttg
gtgttcatggggccagccttctaccagaggctgcaccacatggccgtcgacaaggtgaag
ttacgcaacaccgggccagtgcacccactcacgaggcagccagtcgaggacaagaaaagg
ttcggcggagtcaagtttggggagatggagcgcgactgcctcctcgcacacggtgccacc
gccaacgtccacgagcggctgttcagggtcagcgacctctccgaaatgcacatctgccag
gcatgtcagcgagtcgcaaatgtgattctgaggtccgaaggggggaagaaggtccatggc
ccctactgtgggttctgcaagtccgcagagaacatactccgggtcaacgtgccttatggc
gcaagcctcctgtacaaggagctcttctgcatggggatctgcctcaagttcgagactgaa
gtgatatag

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