Brachypodium distachyon (stiff brome): 100839320
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Entry
100839320 CDS
T01717
Name
(RefSeq) probable serine/threonine protein phosphatase 2A regulatory subunit B''delta isoform X1
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100839320
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bdi01009
]
100839320
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100839320
03036 Chromosome and associated proteins [BR:
bdi03036
]
100839320
Protein phosphatases and associated proteins [BR:
bdi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
100839320
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
100839320
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
100839320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_8
EF-hand_1
EF-hand_5
DUF4187
DUF5539
Motif
Other DBs
NCBI-GeneID:
100839320
NCBI-ProteinID:
XP_003574057
UniProt:
I1I4N9
LinkDB
All DBs
Position
3:29891035..29902202
Genome browser
AA seq
541 aa
AA seq
DB search
MEVEPARRDAAALDPELLQLPELAPGALRENSSIAEALYTQWLVLPESSKLVKCLIEDAK
TGATLNASGSSASTNAASSSSLPSMFPAGSAPPLSPRSTAGSPRVMRRASGAGPSSLGSP
LKLVSEPVREVIPQFYFKNGRPPPKDLREQCLSRLDHLFFAGEGLQLQEFRTVLKDICKL
PSFLSGVLFKKIDVACSGTVTRDAFVDYWINDNKITMDTASQIFEVLRQPGYNYLTQEDF
KPVLKELLATHPGLEFLQGTPEFQDRYAETVIYRIFYSINRSGNGHLTLRELKRGNLVAA
MQQLDEEEDINKVLRYFSYEHFYVMYCKFWELDSDHDFLIDKENLIKYGNHSLTYRIVDR
VFSQVPRKFTSMTEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGILTTNEMQF
FYEEQLHRMECMGQEPVLFEDILCQMIDMIGPENETYFTLRDLKRCKLSGNIFNILFNLN
KFMAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDGEDASNGSGDVWDESLEAP
F
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggagccggcgaggagggacgcggcggcgttggacccggagctgctgcagctg
ccggagctcgcgccgggcgcgctccgggagaactcgagcatagccgaggcgctctacacg
cagtggctcgtgctgcccgagtcgtccaagctggtgaagtgtttgattgaagatgcaaaa
accggtgccacactgaatgcttctgggagctctgctagcacaaatgctgcttcaagtagt
tctttgccgtcgatgttccctgctggcagtgctcctccgctttcacctaggagcaccgct
ggctctcctcgtgttatgcgacgagcatctggagctggaccatcatccttgggatctcca
ctaaaattagttagtgaacctgtgagagaggttatacctcagttttacttcaaaaatggg
cggcctccaccaaaagatttgcgggagcagtgcttgtctagactagatcacctctttttt
gccggggagggactccagcttcaagaattcagaacggtcctaaaagacatatgcaagtta
ccatcattcctctctggggttcttttcaagaagatcgacgttgcatgctctggaactgta
acaagggatgcatttgttgattactggattaatgacaataagattacaatggatacagct
agccagatatttgaagtattaagacaaccgggttacaattatctcactcaggaggatttt
aagcctgtcctaaaagagctcctggcaactcacccaggcttagagttcctacaaggcact
cctgaatttcaggacagatatgcggagactgtgatatacagaatcttttactccataaat
agatctggaaatggccatcttacccttagagagctaaaacgtgggaatttagtagctgca
atgcagcaactcgatgaggaagaggatattaacaaagtgttgagatacttctcatatgag
catttttatgtgatgtactgcaaattttgggagctggactcagatcatgattttttgatt
gataaagagaacctcatcaaatatggaaatcattccttgacctacagaatagttgataga
gtcttttcacaggtcccaaggaagttcacaagcatgacagaaggaaagatgggttatgaa
gattttgtttactttattttgtcagaagaagataaatcatctgagcctagccttgagtac
tggtttaagtgcattgatcttgatggcaatggtattttaactaccaatgaaatgcagttt
ttctatgaggagcagttgcatcgtatggagtgcatgggacaggaacctgtgctgtttgag
gacatactatgccaaatgattgatatgattggaccagagaatgagacctattttacactg
cgggacttaaagcggtgtaaactttcaggaaatatattcaatatcctattcaatctcaat
aaatttatggcatttgaaactcgtgatccattcctgattcgccaggagcgtgaaaatcca
actctaacagagtgggatcggttcgcccatagggaatatattaggttgtcgatggaagag
gacggtgaagatgcttcaaatggaagtggtgatgtgtgggatgagtcacttgaagctcca
ttttga
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