Brachypodium distachyon (stiff brome): 100839511
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Entry
100839511 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bdi03009
]
100839511
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100839511
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
Pre-60S particles
Helicases
100839511
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
DUF1652
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100839511
NCBI-ProteinID:
XP_003569064
UniProt:
I1HCA3
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All DBs
Position
2:complement(2794387..2797708)
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AA seq
644 aa
AA seq
DB search
MASSSPASAAARKRALTEQRFSELTPALSPEVVKALRRGGFRRCTPVQAATIPLLLSHKD
VAVDAATGSGKTLAFVVPVVEMLRRLPSPPKPHQVLGIIISPTRELSSQIYNVAQPFFAT
LKGVSSILLVGGLDIKAELQKVEEEGANILVGTPGKLFDIMERLDTLEYKNLEILILDEA
DRLLDMGFQKQITSIISKLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVQVKTEVKPSS
KDAVQQDLGLSKTPLGLRLEYMICEASKKSSQLVDFLVRNTGKKIMVYFATCACVDYWAV
VLPMLNLLKGSPIIPYHGKMKQGPREKALASFSALSSGILVCTDVAARGLDIPHVDLIVQ
YDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPTEDTYVEFLKLRGVPLMERECSTDIVDI
VPQIRAAALEDRNIMEKGLRAFVSFVRSYKEHHCSYIFRWKGLEIGKLAMEYGLLQIPSM
PEVKHNSLSLKGFIPIGNVNFTQIKYKDKTREKQRQKVLKRKAEELAQEPQIEEKRKPRE
KPPTRKQTGKQRQTVQTKEDMDELTQEYRLLKKLKRGVIDEDEYEKLTGFGDSDGGGSSE
DDAAGKEKGKERRSKEQKKLKQRGGRARGTRKFEGDSKMKSKRR
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcctcgccggcgtcggcggcggccaggaagcgcgcgctgacggagcagcgg
ttctcggagctgaccccggccctgtccccggaggtggtgaaggccctgaggcgcggcggc
ttccggcggtgcacgccggtgcaggcggcgaccatcccgctgctgctgtcgcacaaggac
gtggccgtcgacgccgcgaccggctcaggcaagaccctcgccttcgtagtccccgtcgtc
gagatgctccgccgcctcccctcgccgcccaagccccaccaggttcttggcatcatcatc
tctcccacgagagagttgtcctcgcagatatacaatgtggcgcagcccttcttcgcgacg
ctgaagggcgtgtcgtccattctcctggtcggtgggctggacattaaggcagagctccag
aaagtcgaggaggagggcgcaaacatactggtgggcactcctgggaagctgtttgatata
atggagcgcttggacactctggagtacaagaatcttgagattttgatcttggatgaggca
gatagactcttggatatgggctttcagaagcaaattacctccattatttcaaaactacca
aagctacggagaactgggcttttttcagcaactcagacagaggctgtcgaggagctggca
aaagcagggttgaggaatcctgtgagggtccaggttaagacggaggtgaagccatcgagt
aaagatgctgttcagcaagaccttggtctgtccaaaacaccgctggggctccggttggag
tatatgatatgtgaagcatcaaagaagtcatcgcagcttgttgatttccttgttcgtaac
actggaaagaaaatcatggtctattttgcaacatgtgcctgtgtagattattgggctgtt
gttcttccaatgctgaacttgcttaaaggttctccaataataccttaccatgggaagatg
aaacagggccctcgtgagaaagctttggcatcattttctgctctttcaagtggtatttta
gtctgcactgatgttgcagcaaggggacttgacataccgcatgttgatctaattgtgcag
tatgatccaccccaagatcccaatgttttcatacatagagcaggccgtactgcccgttat
gatcaagagggagatgctattgtatttctcttaccgacggaggatacttatgttgaattc
ttaaagcttcgaggtgttcctctcatggaaagggagtgttccacggatattgtagatatc
gtgccacagattagagcagctgcattagaagatcgcaatatcatggagaaagggcttaga
gcttttgtctcatttgttcgatcatacaaggagcatcactgctcatacattttcaggtgg
aaaggacttgaaatcggaaagctggccatggagtatggcttactccagattccatccatg
ccagaagtgaagcacaattcactttcgctaaagggatttattcctattggcaatgtcaat
tttacacaaatcaagtacaaggataaaactcgagagaaacaacgccagaaggtattgaaa
agaaaagcggaagagctagctcaagagccacaaattgaagagaagcggaaacctcgtgag
aagccaccgacgcgcaagcagacgggtaagcagcggcaaacagtccaaaccaaagaggac
atggatgagctgacgcaagagtaccgcctcttgaagaagctgaagcggggtgtgattgac
gaagatgagtacgagaaactcaccggttttggagactctgatggcggaggttcttcggaa
gacgatgcggctggcaaggagaaaggcaaggaaaggcgcagcaaggagcagaagaaactc
aagcagagaggaggaagggcaagagggaccaggaaatttgaaggcgacagtaaaatgaaa
agcaaaaggagatga
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