Brachypodium distachyon (stiff brome): 100840289 Help Entry 100840289         CDS       T01717                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism bdi  Brachypodium distachyon (stiff brome) Pathway bdi03040   Spliceosome Brite KEGG Orthology (KO) [BR:bdi00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100840289  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:bdi03019]     100840289    03041 Spliceosome [BR:bdi03041]     100840289 Messenger RNA biogenesis [BR:bdi03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      100840289 Spliceosome [BR:bdi03041]  Complex B   Other components    Prp19-related factors     100840289  Complex C     100840289 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 TPR_19 TPR_15 ARM_TT21 ARM_TT21_C DUF4611 Herpes_UL49_2 TPR_5 TPR_16 UTP6_C Motif Other DBs NCBI-GeneID:  100840289 NCBI-ProteinID:  XP_003562567 UniProt:  I1GRS4 LinkDB All DBs Position 1:15771546..15776360 Genome browser AA seq 937 aa AA seqDB search MPSAAAGPVAVAVALAGKASSPAAFAAPSMEISPDLYPTEDDLPYEEEILREPFKLKGWW RYLVARAAAPFPKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPVSHQAYTALNNTF ERALATMHKMPRVWVLYLTSLLDQRLLTRGRRSFDRALRALPVTQHDRIWPLYLRLASLP ACPAETSLRVFRRYLQYDPSHAEDFIEFLVSAKRWQEAADRLASVLNDDGFRSVKGKTRH QLWLELCEILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDV FEEGVASVMTVKEFSVVFEAYTQFEQSMLAAKLEAAEEDDDAGSDEDDEGGRKNGVEKQS MKYLAGCWLNDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPA KQGATYVEAVRTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKKATQVNYKAVDHL ATIWCEWAEMELRHNYFDKAIELMRLATAEPSVEVKRRAAAEGDEPVQLKLHKSLKLWSF YVDLEESLGTLESTRSVYERILDLRIATPQIILNYAYLLEEHKYFEDAFKVYERGVKIFK YPHVKDIWVTYLTKFVRRYQRSKLERARELFTEAVQKAPPEEKKALYLQYAKLEEDYGLA KRAMNVYDEAVRAIPNNEKMGMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVMTMC MKFAELERNLGEIDRSRAIYVHASNYADPNSHPEFWKKWNDFEIQHGNEDTFREMLRIKR TVAASRSQTHFILPEYLMQRDQRLNLDEAVDTLTRAGVPQDEMAALERQLAPSTAPSAAA APSTSTTPANRMMNFVSAGVEARAESSTQQAANNEDIELPDDESDEEEDVQIAERSVPAA VFGELGKRAAENREESSGAQENEQQLGALERIKRRRQ NT seq 2814 nt NT seq  +upstreamnt  +downstreamnt atgccgtcggcggctgcgggtcccgtggcggtggcggtagcgctggcggggaaggcttcg tcgccggcggccttcgcggccccatccatggagatctcgccggacctgtacccgacggag gacgacctgccctacgaggaggagatcctgcgggagccgttcaagctcaagggctggtgg cgctacctcgtcgcccgcgccgccgcgccgttccccaagcgcgccgtcatctacgagcgc gcgctcaaggcgctcccgggcagttacaagctctggcacgcctacctccgggagcgcctc gaccacgcgcgcccgcacccggtctcccaccaggcatacacggcgctcaacaacaccttc gagcgcgccctcgccaccatgcacaagatgccccgcgtctgggtcctctacctcacctcg ctgctcgaccagcgcctgctcacgcgcggccgccgctccttcgaccgcgccctccgcgcg ctgcccgtcacccagcacgaccgcatctggccgctctacctccggctcgcctcgctcccg gcgtgccctgccgagacgtcgctccgcgtgttccgccgctacctccagtacgacccttcc cacgccgaggacttcattgagttccttgtctccgctaagcgctggcaggaggctgctgac cgcctggcctctgtgctcaatgacgatggtttccgctccgtcaaggggaagactaggcac cagctctggcttgagctttgtgagatccttaccaagcatgccgatgaggtcgctgggcta aaggtggatgccatactgcggggcgggatacgcaagttcactgatgaggttggcaagctt tggacctcactggctgattactatgtcaggaggaccctctatgagaaggcaagggatgtc ttcgaggagggagttgcttcagtgatgacagtgaaggagttcagtgttgtctttgaggca tatacgcaatttgagcagagtatgcttgcggcaaagctggaggcagctgaagaggatgac gatgcagggagtgacgaggatgacgaaggaggcaggaagaatggggtggagaagcaatcg atgaaatatcttgcaggctgttggttgaatgatgaagatgatactgacttgaggctggca aggtttgagcggttgttggatcgcagaccagagctccttagcagtgtactattgaggcag aatccacataatgtggaagagtggcacaggagagtaaaacttttcgaaaaggatcctgca aagcaaggagccacatatgttgaggctgtgagaactgtggacccgatgaaggcagttggg aaaccccatactctatgggtggcatttgcaaagatgtatgagaaacacaatcgtttagac agtgctgaagatatctttaaaaaggccacacaagtgaactataaggcagtagaccatttg gctacgatttggtgtgagtgggcggagatggagctccgccacaattactttgacaaggca attgaactcatgagattagcaacggcagagccctctgtcgaggtgaagaggcgagctgct gctgagggggacgagcctgtccagctgaaattacataaatctctaaaattatggagtttc tatgtggatctggaagagagccttggaaccttggaatcaacccgttctgtttatgagaga atattggatttaagaatagccacgccgcaaatcatactcaattatgcatatctccttgag gagcacaagtattttgaagatgcatttaaagtgtatgaaagaggcgtaaaaatattcaag tatccccatgttaaggatatttgggtgacctacctcacaaagtttgtaaggagatatcag agaagcaagttagagcgagcaagagagctgttcactgaagctgtccaaaaggctccgcca gaggaaaagaaggccttatatttgcaatatgctaaactggaggaagattatggccttgca aaacgtgcgatgaatgtatacgacgaagctgtaagggctattcctaacaatgaaaagatg ggtatgtatgaaatatacatagcacgtgctgcggaacttttcggtgttccaaggacccga caaatatatgagcaagccatagaatctggcctcccagacagagatgtgatgacaatgtgc atgaagttcgcggagcttgaaagaaacctcggagaaattgaccgttcgcgtgccatctat gtccacgcttccaactatgctgatccaaactctcatccagagttctggaagaaatggaac gatttcgagatccaacatggcaatgaagatacatttagggagatgcttcgcatcaaacga acagtggccgctagccgcagtcagacgcatttcatacttccagagtacttgatgcagagg gaccagaggctaaacctggatgaggcagttgacactctgacgcgtgctggtgtccctcag gatgagatggcagccttggaaaggcaactagctccatccacagcaccatcagcagcagca gctccaagcaccagtacaactcctgcaaacaggatgatgaactttgtcagtgctggagta gaggcacgggctgagagcagcacacagcaggctgctaacaatgaggacattgagctgcct gatgatgagagcgatgaggaggaggatgtccaaatcgcggagaggagtgttcctgctgcc gtgtttggagagctcggcaagagagctgcagagaatagggaggaaagctctggtgctcag gagaacgagcagcagctgggcgccctcgagagaattaagcgaagacgccaatag

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