Brachypodium distachyon (stiff brome): 100840583
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Entry
100840583 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100840583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100840583
03036 Chromosome and associated proteins [BR:
bdi03036
]
100840583
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100840583
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100840583
mRNA degradation factors
5'-3' decay
Decapping complex
100840583
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100840583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
TFIIA
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
100840583
NCBI-ProteinID:
XP_003580213
UniProt:
I1J012
LinkDB
All DBs
Position
5:20138818..20148473
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AA seq
495 aa
AA seq
DB search
MDPRARYPPGTGNGRGGNPNYNGRGPPPAQQHHLQPPPPQVQQQYMQRQSQHHNQQLQQQ
QWLRRNQIAGEAEGAARASEHHAPPATDGIDSSSQDWKTQLKLPPPDTRYQTEDVTATKG
NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAL
EKIDQDKNAIQVAILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLHQPV
HLLVGTPGRVLDLTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPMSRQILMF
SATFPVTVKAFKDKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQ
SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR
GIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE
IKPIPPQIDRTIYCQ
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgggcgaggtaccctcccggcaccggcaacggtcgcggcgggaaccctaac
tacaacggccgtggcccgccgcccgcgcaacaacatcacctgcaaccgccgccgccgcag
gtacagcagcaatacatgcagcggcagtcgcagcaccacaaccagcagcttcagcagcag
cagtggcttcggcggaatcagattgctggcgaggccgagggcgctgcaagagccagcgag
caccacgccccgcctgccaccgatggcatcgattcgagttcacaagattggaagacccaa
ttgaagcttccacctccagatacacgctaccaaacagaggatgtcactgcaaccaaggga
aatgaattcgaagactattttctgaagcgtgaacttcttatgggtatatatgagaaagga
tttgaaagaccttctcctatccaagaagaaagcattcctattgcattaactggcagcgac
attctcgctagagctaaaaatgggactggcaagactgctgcattttgtatacctgcacta
gaaaagattgatcaagacaaaaatgctattcaagttgctatattggtccccacaagagaa
ttggctttgcaaacatcacaagtatgcaaggaacttgggaaacacctgaagattcaagtc
atggttactactggaggaaccagcctgaaggatgatatcatccgtcttcatcaacctgtt
catttacttgttgggacgcctggtcgtgtcttggaccttacaaagaaaggcatttgcatt
ctgaaggactgttcaatgcttattatggatgaggcggacaagcttctttctcctgagttc
caaccctctgtggaacagttgattcgatatcttccaatgagtcgacagattctgatgttc
tctgcaacattccctgtgactgtcaaagcgttcaaggacaaatatctcccgaagccctat
gtaattaaccttatggacgaacttacactgaagggaattacccagttctatgcttttgtt
gaagaaagacaaaaagtccattgtcttaacactcttttttccaagctgcaaattaatcaa
tcaataatattctgtaactctgtaaatcgtgttgaactactggcaaagaagatcacagag
cttggttactcttgcttctacatccacgctaaaatgctgcaagatcatcgcaacagagtt
ttccatgatttccgtaatggtgcatgtaggaaccttgtctgtacagatctttttacaagg
ggaatagatatccaagctgttaatgttgttatcaactttgattttcccaagaacgctgaa
acctatctccacagggttggtagatctgggagatttggccaccttggtctggctgtgaat
ttgatcacctatgaagatcggtttaacttgtataggattgagcaggagcttggcactgag
ataaaacctatacctcctcagatagaccggacgatatattgccagtag
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