Brachypodium distachyon (stiff brome): 100840685
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Entry
100840685 CDS
T01717
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100840685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100840685
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100840685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Vps36-NZF-N
Motif
Other DBs
NCBI-GeneID:
100840685
NCBI-ProteinID:
XP_010240611
UniProt:
I1J3D3
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Position
5:complement(27447493..27452425)
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AA seq
688 aa
AA seq
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MFVPKTDNQSDLEEPCRNPGPWQCTICTHQNETSYISCELCGVLRNLSLYFNNAVGTEGG
AKRRNKHSGVSVLARSLFSPPSPKSKAVVFSDGFQGNTNTTGYMQASLDALHETYMTHKQ
RRVNIVPFKFDTPSPDDMVSAGLKSFKHVRKVNAEAPSIDSVDIAGKKVMDDHDLVTQDA
HTDPSSSAKLDELGGNGSSVDVHIQNKTPVLDDELQHLSLEGKPKNIKAKIKKPVSVSQY
KAEPWMLQGEDQKMPRQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHKNEKEAKEKG
KGSFAYAWAMDESAEERARGVTMTVGVAYFDTENYQVVLLDSPGHKDFVPNMISGATQSD
AAVLVVDASVGSFESGMGVNGIGQTKEHAQLIRSFGVENLIVAVNKMDSVEYSKERFSFV
KSQLGMYLRSCGYKESAISWVPLSAMNNENLVTVASDTRLSSWYDGNCLLKAIDSLAPPR
RDVSKPLRLPICDVVSSHMLGQVAVCGKVATGAIRSDSKVLVMPSGELATVRIIERDSSR
LNLARAGDNIAIGLQGIDPIHVTSGGVLCHPDYPVSVASSLELKILVLDITVPILVGLQF
ELHIHHAKVSASLVKILSLLDQKTGKASAKKPRMLTARQAAIIEVKLEREVCVEEFSALK
ALGRAFLRSQGITVAVGVVTRVPEQVQV
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcctaaaacagacaaccaatctgatctcgaggagccatgtagaaatcctggg
ccatggcagtgcaccatttgcacacaccaaaatgagacgagttacatttcctgtgagcta
tgtggtgttcttcgtaatttgtcattgtatttcaataatgccgttggaactgaaggtgga
gcaaaacgcagaaacaagcattctggagtatctgtactggcaagatctcttttcagccca
cccagtccaaaatcaaaagctgttgttttctccgatggctttcaaggcaacacaaacaca
acaggatatatgcaagcttctctggatgctctgcatgagacatatatgacacacaaacag
cggcgtgtcaacatagtgcctttcaagtttgatacgccatctcctgatgacatggtctct
gctggcttgaaatcattcaaacatgtgagaaaagttaatgcagaggctccatctatagat
tctgttgatatcgctggaaagaaagtgatggatgatcacgatcttgtaactcaggacgca
catactgacccaagttcatctgcgaagttagatgaacttgggggaaacggtagcagtgtt
gatgtccatattcaaaataaaacacctgttttggacgatgagctacagcatttgagttta
gaggggaaaccaaaaaacatcaaagccaagattaagaagccagtttctgtttcacagtac
aaggcagaaccgtggatgctccagggtgaagatcagaaaatgcccagacaattaaatctc
gctattgttggtcatgtcgattctgggaaatcaactttatgtggtcgattgctgcatgct
ctggggaggatttcaaaaaagcaaatgcataaaaatgagaaagaagcgaaagaaaagggg
aaagggtcatttgcatatgcttgggctatggacgagagtgctgaagaaagggcacgtggc
gttacaatgactgtgggtgtagcatactttgacaccgaaaattaccaagttgttttgctt
gactcccctggtcacaaagattttgttcctaatatgatatctggagcgacacagtctgat
gcagctgtcctagttgtcgatgcctctgtagggtcattcgagtctggtatgggtgtgaat
gggattggacagacaaaggagcatgcgcagcttattagaagctttggtgttgagaatctg
atagttgctgttaataagatggattcagtggaatattcgaaagagcgattcagttttgtg
aaatcacaacttggtatgtatctccgatcatgtggttataaagagtcagcaatttcttgg
gttcctttgagtgcaatgaacaatgaaaacttggtgacagtagcttcagatactcgtctg
tcatcatggtatgatgggaactgtcttctgaaagccatcgactcgttagcacctcctcgt
cgagatgtttcaaagccactacgccttccaatctgtgatgttgtttcatcccacatgctg
gggcaagtggcggtctgtggtaaagtagcgactggagcaatccgaagcgattccaaggtt
cttgtcatgccatccggagagttagctacagtgaggatcatcgagcgagattcctctcgt
ttgaacctggcaagagctggggacaacattgctatcggcttgcaagggatcgaccctatc
cacgttacgtccggtggagttctttgccatccagactaccctgtgtccgttgcttcttcc
ttggagctgaaaatccttgttctagatatcactgtaccgatattggttggccttcagttc
gagctccacatacaccacgcgaaggtgtccgcgagcctggtgaagatcctgtcgctgctg
gatcagaagaccggcaaggcctcggcgaagaagccgcggatgctcaccgcaaggcaggcc
gctatcatcgaggtgaagctggagcgggaggtgtgcgtggaggaattctcggcgctgaag
gccctgggccgggccttccttcggtcccaggggatcacggtcgccgtgggcgtcgtgact
cgtgtgccggagcaggttcaggtttag
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