Brachypodium distachyon (stiff brome): 100840811
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Entry
100840811 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14 isoform X3
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100840811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100840811
03009 Ribosome biogenesis [BR:
bdi03009
]
100840811
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100840811
Spliceosome [BR:
bdi03041
]
Complex A
U1 snRNP components
U1 related factors
100840811
Complex B
100840811
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
Pre-60S particles
Helicases
100840811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
SWI2_SNF2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
100840811
NCBI-ProteinID:
XP_003565397
LinkDB
All DBs
Position
2:complement(3144383..3149190)
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AA seq
655 aa
AA seq
DB search
MASSAGPRYAPPDPTLPKPWRGLIDGTTGYLYFWNPETKAVQYDRPTGPPPPAPAPLPAP
VAQPAYPEERARNRDAPERRSEAAGNRVQNVPFADHKPRSDPSLEPRYSGGVHHTAVTST
NQVSQAANGNHISPEAYRAKHEITIIGNESPAPFMTFQSTCFPPEILREVQQAGFSAPSP
IQAQSWPITLKGRDIVAVAKTGSGKTLGYLLPGFILVKNLRNNSRDGPTVLVLSPTRELA
TQIQDEAVKFGRSSRISSTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRKVSLH
QVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKIASDLLTNPVQV
NIGNTDQLVANKSITQYVEVISPMEKQRRLDQILRSQEPGSRIIIFCSTKRMCDQLSRNL
SRQYGASAIHGDKSQAERDSVLSEFRNGRCPILVATDVAARGLDVKDIRVVVNYDFPTGV
EDYVHRIGRTGRAGATGLAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMASRGGYGS
RPPRRWASSNDSYGGQGSFGSHSRDGSSFQSSAYNSSSGNTFGSTPSFHSSSSNNNQSSG
NPSFPASGGNNQSGDGLSFHERFYSSRGADQNRTSNDGFRARSRSPPKAVGVSNW
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcggcgggcccccgctacgcgccgccagatccgacgctgcccaagccgtgg
aggggcctcatcgacggcaccacgggttacctctacttctggaacccggagaccaaggcc
gtccagtacgaccgccccaccggtccgccgcccccggcccctgctccgctcccggccccc
gtcgcgcagcctgcctaccccgaggagagggccaggaaccgagacgctcccgagcggcgc
tccgaagctgcaggaaaccgcgtgcagaatgtgccctttgctgatcacaagcccaggagc
gatccttctttggagccacgctattcaggtggagtgcaccacacagctgtgacatcaact
aaccaagtttcacaggctgccaatggaaaccacatctcgccagaagcataccgtgctaag
catgagattactattattggaaatgaatctccagcgccattcatgacgtttcagtccaca
tgcttccctcctgagattctaagggaggtgcagcaagcaggattttcagcaccaagtcct
atccaagctcaatcatggccgattactctaaagggtcgtgatattgtagctgtggcaaag
acaggttctggaaaaactctgggttatctacttccagggttcattcttgttaagaaccta
cgtaacaattcaagggatggtccgactgtgttagttctgtctccaaccagggaattggca
acccagattcaagatgaagcagtcaagtttggtagatcatcaagaatatcatctacttgt
ctatatggtggtgctccaaaaggccctcagctaagggatttggagcgtggtgctgacatt
gttgttgcaactcctggaagattgaatgacattttagaaatgcgaaaagtgagcctgcat
caagtagcatatcttgttcttgatgaagctgaccgaatgcttgatatgggatttgagcca
caaataaggaaaattgtgaaacaagtacaacctaaacggcaaactcttatgttcactgcc
acttggccaaaggaagtgaggaaaatagcctcagatttgctgactaacccagtccaagtt
aacattgggaacactgatcagctggttgcaaataagtcaatcactcagtatgtggaagtt
atctcacctatggagaaacagagacgacttgatcagatcttgcgatcacaggagcctgga
tccagaatcataatcttttgttccactaagaggatgtgtgatcagctgtcccggaactta
tctcggcagtatggggcttctgctattcatggtgataaatcacaggctgagagggactct
gttttgagtgaatttcgaaatggcaggtgcccaattcttgtagccactgatgtggctgct
cgaggcttagacgtaaaggatatcagagttgtggttaactatgatttcccaacgggtgtt
gaggactatgtccataggattgggcgaacaggtagggctggtgcgactggacttgcatat
acattcttctgtgatcaggattcgaaatatgcttcggatcttgtgaagattttggagggt
gcaaaccaatcagtttcgcaacagttgcgagatatggcttcccgtggaggttatggtagc
aggccaccacggcgttgggcatcatctaatgattcctatggtggtcagggatcttttggc
agccattctagggatggttcaagctttcaatctagtgcctataacagcagcagtggcaat
acatttggcagtactcctagcttccattccagcagcagtaacaacaatcagtccagtggc
aacccaagcttccctgccagtggcggcaacaatcaaagtggtgatggtctcagctttcat
gaaagattctatagctctcgaggtgctgatcagaacagaacaagcaatgacggcttccgg
gctaggagcaggagtcctcccaaggctgtgggagtctccaactggtaa
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