Brachypodium distachyon (stiff brome): 100841005
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Entry
100841005 CDS
T01717
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi00040
Pentose and glucuronate interconversions
bdi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
100841005
Enzymes [BR:
bdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
100841005
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
100841005
NCBI-ProteinID:
XP_003562741
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Position
1:17823831..17825696
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AA seq
418 aa
AA seq
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MPTEHTILGHRLKMARLVLAFRRACGAHGTGEPPSTPQPARWPASLISKLGRAVHLCLSP
RDLLCCCCWISRRLPLSSPLLLHHMEIPRPPETQMPYGDADCTLRALAARAEGFGCHAIG
GLHGALYYVTSLQDDGCGTLREACRIKEPLWIVFEVSGTIDLQSYLRVSSYKTIDGRGHR
VKLTGKGLQLRDCHHVIVCNLEFEGGRGHDVDGIQIKPNSSNIWIDRCTLADYDDGLIDI
TRQSTDITVSRCHFSRHDKTMLIGADPTHVGDRCIRVTIHHCFFDCTRQRHPRLRFGKVH
LYNNYTRNWGIYAVCASVEAQIVSQSNIYQAGEKKTVFKYMPEKAGDKEEVAAGWIRSEG
DAFLQGAQSCLIDGPGVDTVFRPEHYYDKWTMETASPALKEVIELCAGWQPVPRPPDC
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgccaacggagcacaccatcctgggacaccggctaaagatggcgcgtctcgtgttggca
tttcgtcgagcatgtggtgcgcatggcaccggcgaaccgccgtccacgccgcagccagct
agatggcccgcctcgctaatctctaaattaggtagggcagtccatttgtgcctttcccct
cgagacctcctctgctgctgctgctggatctcacggcgcctcccgctctcatcccccctc
ctcctgcaccacatggagatcccccgtccgccggagacgcagatgccctacggcgacgcc
gactgcaccctccgcgcgctggctgcccgcgccgagggcttcggctgccacgccatcgga
ggcctccacggcgccctctactacgtcacatccctacaagacgacgggtgcgggacactc
cgcgaggcgtgccgcatcaaggagccgctatggatcgtcttcgaggtctccggcaccatc
gacctccagtcctacctccgggtctcctcctacaagaccatcgacggccgcggccaccgg
gtcaagctcaccggcaagggcctccagctcagggactgccaccacgtcatcgtctgcaac
ctcgagttcgagggcggccgcggccacgacgtcgacggcatacagatcaagcccaactcc
tccaacatctggatcgaccgatgcaccctcgccgactacgatgacggcctcatcgacatc
acaaggcagagcaccgacataaccgtctccagatgccacttctcaaggcatgacaagacg
atgctgattggcgcagaccccacgcacgtcggcgacagatgcatcagggtgaccatccac
cattgcttcttcgactgcacgaggcagaggcacccacgcctgcgattcggcaaagtccac
ctctacaacaattacaccaggaattggggcatatatgccgtgtgtgctagcgtcgaagcg
cagattgtgtctcagtctaacatataccaagcaggagaaaagaagacggttttcaaatac
atgccagagaaggctggtgacaaggaagaagtggcagccgggtggatcaggtcggaaggc
gatgcatttctgcaaggcgcgcagtcatgcttgatcgatggtccaggtgtagacactgtc
ttcagaccagagcattactatgacaaatggaccatggaaaccgcatcgccggctctcaag
gaggtgattgagctgtgcgctgggtggcaacctgtgcccaggcccccagattgctga
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