Brachypodium distachyon (stiff brome): 100841345
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Entry
100841345 CDS
T01717
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100841345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100841345
Enzymes [BR:
bdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100841345
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100841345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100841345
NCBI-ProteinID:
XP_003572239
UniProt:
I1I7F1
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All DBs
Position
3:complement(39046415..39050698)
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AA seq
596 aa
AA seq
DB search
MAAARAAAKQVTKRNFPEALQELAAHLKECDYVAVAALKTGAPTGWRRALPVDTAETAYL
KAKLAAESFQPLHIAVCPFRFDATSHSTVVAYPYNFHLFPRDELQLGMPSYSFSCQTSYF
SSMARDGFDFNMCIYDGISYLSRVQESLARQKIFIPHLRQPSPSPSTTVADSVFTTRIKS
RIQHWRKGYAEPSKTADGSLVNSLRKLILGGESYGSRPSMSIDVCSDRQVQLVLETINRV
SDDLVPLVVPDKAGMSRAVRVIFTSSEEDKNLLLMDIQKLEDEHSVKFRGFREVIDLLSS
SQKPIISYNCLNDLTMIHTKFIGPLPPNMHEFTCSLRMVFSSVVDVGHLWREIGPLRNAK
NIQAALSYLQRQYFVPMEIEIPQQDGTNSVTKGGENVLRITKLFAKLSMLLKISPKHQSQ
SGEQHHTVEDFCNIFYPGCMAGESDDVDCTKEPDITRTVSTDSVIFLWGFRKTSAKELRY
LLTRLHHVFSNDFELRLLDKTCSVLIFRSSDTPMELLREISSESPSLNNFFSEGLKAAGF
DVYWKVCRLGLWDSDLAEALEAVSSEQATSALSGHGTSEIYWNSSLMLDIKEYLEC
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggctgccgcacgcgcagccgcgaagcaggtgaccaagcggaacttcccggaggcgctg
caagagctggcggctcacctgaaggagtgcgactacgtagccgtcgcggcgctgaagacg
ggcgcccccaccgggtggcgacgcgcgcttccggttgacaccgccgagacggcgtacctg
aaggccaaactcgctgccgagtccttccagcctctccacatcgccgtctgcccattccgc
ttcgacgccacctcccattccaccgtcgttgcctacccgtacaattttcatttgtttccc
agagatgagttacagcttggaatgccttcttatagtttctcctgccaaacatcttacttt
tcatccatggcccgtgatggttttgatttcaatatgtgcatttatgatggtatatcttat
ctatcaagggtgcaagaatccttggcaaggcaaaagatctttatccctcatcttcgccag
ccatccccatcaccaagcacaactgttgccgattcagtttttacaactagaattaagtca
agaattcagcattggcgaaaaggatatgcagagccaagtaaaacagctgatggttcttta
gtcaattcccttaggaaactaattttgggcggtgaatcatatggttcaaggcccagtatg
agcattgatgtttgcagtgatcgccaagttcaactggttttggagacaataaatcgtgtc
tctgatgaccttgtacctcttgttgttccggataaagctgggatgtctagggcagtgcgt
gtgatctttactagttctgaagaggataagaatcttctcctgatggatatccaaaaattg
gaagatgaacatagtgtgaagtttcgtggatttcgagaagttattgatctgctatcatct
tcacagaaaccaatcatatcatacaattgcttgaatgaccttacaatgatacacaccaaa
tttattgggcctcttccgccaaacatgcatgaatttacgtgttccttgaggatggttttc
tctagcgttgttgacgttggccatttgtggcgagaaattggccctttgagaaatgcgaag
aatatacaagcggctctgagttacttacaaagacagtactttgtgccaatggaaatagaa
ataccacagcaagatggtaccaacagtgtcacaaaaggtggagaaaatgttctaagaatt
acaaaattatttgctaaactaagtatgttacttaaaatcagtcccaagcatcaatctcaa
tctggtgagcagcatcacacagttgaagatttctgtaacatcttttatcctggttgtatg
gccggagaatctgatgatgttgactgcactaaggagccagatatcacaaggacagtgagc
actgacagtgttattttcttgtggggctttaggaagacatctgccaaagaactgagatat
ctccttacaagattacatcacgtcttctcaaacgattttgagctaagattgttggataag
acttgctccgttctgatatttcgcagttctgatactccaatggaattactaagggagatt
agctcggagagtccctcactgaataatttcttctcggaaggtctgaaagctgcaggtttt
gatgtctactggaaggtttgcaggttaggactttgggattcggatttagccgaggccctg
gaggctgtttcatcagagcaagctacttcagcgctttctgggcatggtacctctgagata
tactggaatagttcattgatgctagatataaaggagtatctggaatgctag
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