Brachypodium distachyon (stiff brome): 100841511
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Entry
100841511 CDS
T01717
Name
(RefSeq) THO complex subunit 4D
KO
K12881
THO complex subunit 4
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100841511
09122 Translation
03013 Nucleocytoplasmic transport
100841511
03015 mRNA surveillance pathway
100841511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100841511
03041 Spliceosome [BR:
bdi03041
]
100841511
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100841511
TREX complex
100841511
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100841511
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100841511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_9
Motif
Other DBs
NCBI-GeneID:
100841511
NCBI-ProteinID:
XP_003563990
UniProt:
I1GZ84
LinkDB
All DBs
Position
1:42379908..42384761
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AA seq
311 aa
AA seq
DB search
METSLDMSLDDMIKNRSGRGRGRTGVRGQRGGRGRGDGQNLGRGDGQRLGRGFGRGRGAG
TFRGRGLRVPAQRPLGVNTRSSSYAIAKSFNKTKDFAWTHDRFEDSMVAAGLSGIESGTK
LYISNLHYGVTKEDLQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVQALKRYN
NVRLDGKEMKIEVIGANLGLAAVSAPRVNVIPGVKGRGQREVVMMPRTSAFGRGAADSSN
FLPGWKRNSFAQRGGQARGRGRGRGRGRGLGRGIGRGHGRGVYVRKGPSEKSAEQLDKEL
DTYHSGAMNVD
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggagacatctttggatatgtcactggatgatatgattaagaacagaagtgggagggga
agaggaagaacaggggtaaggggccagagaggtggccgaggcagaggcgatggccaaaat
ttaggcagaggtgatggccaaaggctaggccgtggttttgggcgtggacgtggtgctggc
acctttcgtggaaggggactacgggtacctgcacaaaggccacttggtgttaacactcgg
tcgtcttcatatgctattgccaagtcattcaacaaaaccaaggattttgcatggacacat
gatcggttcgaggatagcatggtggctgctggcctttccggaatagaatctggtacaaag
ctatatatttcaaacttgcactatggagtgacaaaagaagatttacaggaacttttttct
gaaatgggtcatttgaagcactgtgctgttcattatgacaacaatagacgcccaactggt
tcagctgaggtgatattcactaggaggagtgaagctgttcaagcactgaagcgatataat
aacgtgcgccttgatggaaaggaaatgaagatcgaagtgataggagcaaatttgggtttg
gctgctgtttcggcaccccgtgttaatgttattcctggtgtgaagggcagaggacagaga
gaagttgtaatgatgcctcgtacaagtgcatttggtcgaggtgcagctgactcatctaat
ttccttcctgggtggaagcgcaacagttttgctcagagaggaggacaagcccgtggtcgt
gggcgtgggcgtgggcgtgggcgtgggcttgggcgtggcatcgggcggggtcacggacgt
ggcgtctatgtgcggaaggggccttcggagaaatcagctgaacaattggacaaggagctg
gacacctatcattcaggagcaatgaatgttgactaa
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