Brachypodium distachyon (stiff brome): 100841801
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Entry
100841801 CDS
T01717
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100841801
09123 Folding, sorting and degradation
03018 RNA degradation
100841801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100841801
03041 Spliceosome [BR:
bdi03041
]
100841801
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100841801
mRNA degradation factors
5'-3' decay
Lsm complex
100841801
Spliceosome [BR:
bdi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100841801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
100841801
NCBI-ProteinID:
XP_003580635
UniProt:
I1J2B4
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Position
5:complement(25399646..25401677)
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AA seq
100 aa
AA seq
DB search
MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKL
STKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLAADGTS
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atggcggggcgcaaggagactgcactcgacctagccaagttcgtcgacaagggcgtccag
gtgaagctcaccggcggccggcaagtcacaggaactttaaagggctatgaccaattgctg
aacttagtgctggatgaagcagttgagtctgaaagagagcaagatgacccactgaaacta
tcaactaagaccagacagcttggtctcattgtctgtagaggcacagcagtcatgctggtg
tcaccaactgatggaactgatgagattgcaaacccctttctcgcagccgacgggacatca
taa
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