Brachypodium distachyon (stiff brome): 100841980
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Entry
100841980 CDS
T01717
Symbol
LOS4
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100841980 (LOS4)
03015 mRNA surveillance pathway
100841980 (LOS4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100841980 (LOS4)
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100841980 (LOS4)
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100841980 (LOS4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
100841980
NCBI-ProteinID:
XP_003558774
UniProt:
I1H9J1
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All DBs
Position
1:complement(72001844..72006290)
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AA seq
508 aa
AA seq
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MADAVVKPEPEKKSWADLEEEEEAKAKAEAEAEAAAAAAAAAPSSSSSATEPAVDAQAKQ
IEALSLSVPEDDGGQQGPPLLDDSDDSQIQAVTSGGTVYESATTFEDLKLTPELLKGLHD
EMGFTRPSKIQAITLPMILTPPYKDLVAQAHNGSGKTTCFVLGMLSRVDPNRKIPQAICI
CPTRELAQQNKSVLMRMGKFTGITCACAIPPAQKDYMPISRMPAITDQVVIGTSGTLMKW
ITNKKLATREIKILVFDEADHMLAEDGFRSDSERIMRDIQRSAGGCQVLLFSATFNERVK
DFVTKVIKDGNQIFVKKEDLTLEKVKQYKVRVPDEAAKIEVIRDKIFEFGQKVGQVIIFV
RTKISTKNVHNALTKEDYVCSSIQGSLDQSEREKVIQEFKDGYTKVLISTDVLARGFDQA
QVNLVINYDMPIKYNTRDEPDYEVYLHRIGRAGRFGRKGAVFNLLCGDTDDNVMTKIENY
FQHKVPEVPNWKSEENFETALKDAGLLE
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgccgtcgtcaagcccgagccggagaagaagtcctgggccgacctcgaggag
gaggaggaggccaaggccaaggcggaggccgaggccgaggccgccgccgccgccgccgct
gccgccccctcctcctcctcttccgccactgagccggcggtggacgcgcaggcgaagcag
atcgaggcgctctcgctctccgtgccggaggacgacggcggccagcagggcccgcctctg
ctcgatgactccgatgactcccaaatccaagccgtgacctcgggcggcacggtgtacgag
tcggcgacgaccttcgaggacctgaagctcacgccggagctgctcaaggggctgcacgac
gagatgggcttcacccggcccagcaagatccaggccatcacgctccccatgatcctcacg
ccgccctacaaggacctcgtcgcgcaggcgcacaacggctccggcaagaccacctgcttc
gtcctgggcatgctcagccgcgtggaccccaaccgcaagattcctcaggccatctgcatc
tgccccactagggaactcgcacagcagaataaatctgtcctcatgagaatgggcaagttt
acaggcattacctgtgcctgtgctatcccgccggctcagaaagattatatgcccatctcc
agaatgcctgccatcaccgatcaggtggtgattggcacttctgggacactcatgaagtgg
attactaataagaagcttgcgacaagggagatcaagattcttgtgtttgatgaggcagat
catatgcttgccgaggacggctttaggagtgattctgaaaggatcatgagggatatacaa
agaagtgctggtggatgtcaggtgcttctcttttctgcgaccttcaatgagagagtgaag
gattttgttacaaaagtcattaaggatggaaatcaaatatttgtgaagaaggaagatctt
actttggaaaaagtaaagcaatataaagttcgagtccctgacgaggcagcaaaaatagag
gtcataagggacaagatctttgagtttggacaaaaggttgggcaggttatcatatttgtt
agaacaaagataagcactaagaatgttcacaatgctttgacgaaagaggattatgtgtgc
tcctcaattcaaggatcccttgaccaatcagagagggaaaaagtaatacaggaattcaaa
gatgggtacaccaaggttcttatatcaactgatgttcttgctcgaggttttgaccaagca
caggttaacctggtcatcaactacgacatgccaattaagtataatacgagggatgaacct
gattatgaggtgtacctgcacagaattggcagagctgggcgttttggccgaaaaggagct
gtgttcaacctgctatgtggtgacaccgatgataatgtgatgacaaagattgagaactac
ttccagcacaaagtaccagaggttcccaactggaaaagcgaggaaaattttgagactgct
cttaaggatgcgggcttgcttgagtaa
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