Brachypodium distachyon (stiff brome): 100842200
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Entry
100842200 CDS
T01717
Name
(RefSeq) probable pectate lyase 8 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi00040
Pentose and glucuronate interconversions
bdi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
100842200
Enzymes [BR:
bdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
100842200
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
100842200
NCBI-ProteinID:
XP_010239619
UniProt:
I1IVL5
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Position
5:complement(1022525..1027856)
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AA seq
450 aa
AA seq
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MAEGAASTRRWAAAVGAVLVLTLLVFAVSGGRLRAGSTAAASGARRWLRDSTSLLPAASR
RSGGEDDASVDDPETVASQVHMSIKNSTARRNLGYLSCGTGNPIDDCWRCDSDWHNNRQR
LADCGIGFGRNAIGGRDGKLYVVTDAGDDDPVNPKEGTLRYAVIQDEPLWIIFKRDMVIT
LKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCRPTGNAMVRSSPSH
YGWRTMADGDAVSIFGSSHVWVDHCSLSNCADGLVDAIMGSTAITVSNNYFTHHNEVMLL
GHSDSYLKDKAMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTI
NSQGNRYLAPTNPFAKEVTKRVETAQTTWKGWNWRSEGDLLLNGAFFTPSGAGASASYSR
ASSLGAKSSSMVGTITSGAGVLSCRKGSSC
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggggctgcttcgacgaggaggtgggcggcggcggtcggggctgtgctcgtg
ctcacgctcctcgtcttcgcggtctccggcgggcgcctccgggccgggagcacggccgcg
gcgagcggcgcgaggcggtggctccgggactcgacgtcactgctgccggcggcgagcagg
aggagcggtggcgaggacgacgcgtcggttgatgacccggagacggtggcctcacaggtg
cacatgtcgatcaagaacagcaccgcccgaaggaacctgggttacctgtcatgcgggacg
gggaaccccatcgacgactgctggcgctgcgactccgactggcacaacaaccggcagcgg
ctcgccgactgcggcatcggcttcggccgcaacgccatcggcggccgcgacggcaagctc
tacgtcgtcaccgacgccggcgacgacgaccccgtgaaccccaaggaaggcacgctccgc
tacgccgtcatccaggacgagccgctgtggatcatcttcaagcgggacatggtgatcacg
ctcaagcaggagctcatcatgaacagcttcaagaccatcgacgggcgtggcgccaacgtg
cacatcgcaaacggcgcctgcatcaccatccagtacgtcaccaacgtcatcatccacggc
ctccacatccacgactgcaggcccacggggaacgccatggtgaggagctcgcccagccac
tacggctggcggaccatggccgacggcgacgccgtctccatcttcggttccagccacgtc
tgggtcgaccactgctccctctccaactgcgccgacggccttgtcgatgccatcatggga
tccactgctattactgtgtccaacaactacttcacccaccacaatgaggtgatgctcctg
ggtcacagtgattcttatctgaaggacaaggcaatgcaggtcacaatagctttcaaccat
tttggggaaggactcattcagagaatgccaaggtgcagacatggttacttccatgtggtg
aacaatgactacacccactgggagatgtacgccattggagggagcgccgagccaacgatc
aacagccaggggaaccgctacctcgcgccaaccaacccctttgctaaggaggtgacaaag
agagttgaaactgcccagaccacctggaagggttggaactggagatcggagggcgatctc
ctgctgaacggtgccttcttcactccgtcgggagcaggcgcttcagcaagctactcgcgg
gcgtccagcctcggtgccaagtcctcatccatggtcggaaccatcacctccggtgcgggc
gtcctgtcgtgccgtaagggctcctcctgctag
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