Brachypodium distachyon (stiff brome): 100842311
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Entry
100842311 CDS
T01717
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100842311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100842311
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100842311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
ATG17_like
EAD9
Motif
Other DBs
NCBI-GeneID:
100842311
NCBI-ProteinID:
XP_003562321
UniProt:
A0A0Q3GTU8
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Position
1:complement(12194214..12205703)
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AA seq
942 aa
AA seq
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MEGEDYLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRFFDRRDYYTAHGENATFIA
KTYYHTMTALRQLGSNSDGISSVSVSRAMFETIARNLLLERTDCTLELYEGSGSSWRLAK
SGTPGNIGSFEDILFTNNDMQDSPVTVALFPVLRESQLYIGLSFVDMTNRKLGLAEFPED
SRFTNVESALVALGCKECLLPADFEKPIDLQPLQDAISKCSVLLTERKKADFKSRDLVQD
LGRIIRGSVEPVRDLLSQFDYALGALGALVSYAELLADDTNYGNYTIETYNLDRYMRLDS
AAMRALNIAEGKTDANKNFSLFGLMNRTCTVGMGKRLLNRWLKQPLLDVNEINNRLDMVQ
AFAEDPELRQGLRQQLKRISDIDRLTHALRKRSANLQPVVKLYQSCRGISYIKDVLQQYN
GQFSTLIRKRFVSSFEEWLTKNRYGRFSEMVETAIDLKQVENGEYRISPGYSSDLAVLKD
ELSEVENHINNSHMHTATDLDLSVDKQLKLEKGPFGHVFRISKKEEQKVRKKLTSSYIII
ETRKDGVKFTSTKLKKLGEQYQALLGEYTSCQKKIVDDVVRISCTFSEVFENFAAIISEL
DVLQSFADLATSCPVPYIRPDITTSEEGDIVLQGSRHPCLEAQDGVNFIPNDCTLMRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQIGSFVPCDQASISVRDCIFARVGAGDCQLRGV
STFMQEMLETASILKGASEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT
HFHELTALANKNGDQHQHVPDVGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVIALAKSKAEELEDFSAAPNFNDESNDEVGSKRKRVFSPDDVTRGAARARVL
LEEFSALPLDEMDGRKATEVVTKLKLDFEKDAAGNPWLQQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgaagactacttgcctgaggggggcaagctcccagagctcaagctagatgca
agacaggcgcagggtttcatctctttcttcaagaagttgcccaaggatcctcgggccatt
cgtttcttcgatcgccgggattattacacggctcatggtgaaaatgccacatttattgca
aagacatactatcacacaatgactgccttgcgccagttaggcagtaactccgatgggata
tcaagtgtcagcgtaagcagggctatgtttgagaccattgcccgcaatcttttgttagag
aggacagattgtactctggagctctatgagggaagtgggtcaagttggagattagcaaaa
tctggaacacctggaaacatcggcagttttgaagatattctgtttacaaacaatgacatg
caagattctccagttactgttgcgttgtttcctgtgctgcgtgaaagtcagctctatata
gggcttagttttgtggatatgacgaaccggaagcttgggctggctgagttccctgaagat
agtcgattcacaaatgttgaatcagcccttgttgcattaggttgcaaggaatgtcttctt
ccggcagattttgagaaaccaatagatttgcagcctcttcaggatgctattagtaagtgc
agtgttctactaaccgaaagaaagaaggctgattttaagtctagagatcttgtgcaggat
cttggtagaataatcaggggttctgttgagccagttcgtgacctcctatctcaatttgac
tatgctttgggtgcccttggagctctagtgtcatatgctgagttgctagcagatgatact
aactatggaaattacacaattgagacatacaatttggatcgctacatgcgacttgactct
gctgccatgcgagcattgaatattgctgaaggaaaaactgatgcaaacaagaatttcagt
ttgtttggtctgatgaacagaacttgtacagttgggatgggtaaacgactgctcaacaga
tggctgaagcaacctctgctagatgtaaatgaaatcaataacagattagatatggttcag
gctttcgcagaagatccagagcttcgtcagggtcttaggcaacaacttaaaaggatatct
gatattgaccgtctaacacatgctctccggaagagatcagccaacctgcagcctgttgtt
aagctctatcagtcctgccgtggaatctcatacatcaaggatgttcttcaacagtacaac
ggtcaattttctacattgataagaaaaaggtttgttagctcttttgaagagtggttgaca
aagaatcggtatggtaggttttctgaaatggttgagacagctattgacctcaaacaagta
gaaaatggcgagtacaggatatcaccaggatattcttctgatttggctgtgctcaaggat
gagctttctgaagttgagaatcacatcaacaattcacatatgcacacagccactgatctg
gatctttctgttgataagcaattgaagctagaaaaagggccatttggacatgtgttcaga
atctcaaagaaagaagagcagaaagtcaggaaaaaactcactagcagttacattatcata
gaaacccgtaaagatggcgtgaagttcacaagcacaaaacttaaaaagctaggtgaacaa
taccaggcactgctcggcgagtacacaagttgtcagaaaaagattgtcgatgatgtagtg
agaatttcatgcaccttttcagaggtatttgagaattttgctgcaattatatctgagtta
gatgttttacaaagttttgctgatttggcaacaagctgcccagttccttatataagacca
gatatcacaacatcggaggaaggagatattgtgctacaaggtagtagacatccttgtctg
gaggcccaagatggtgttaacttcataccaaatgattgcacgttgatgagagggaaaagt
tggtttcaaatcatcacagggccgaacatgggtggaaaatccacttttatacgacaggtt
ggtgtgaacgtcctgatggcacaaattggttccttcgttccttgtgatcaggcaagcatc
agtgtgagagattgtatttttgctcgtgttggcgctggtgattgccaactccgcggtgtt
tcaacctttatgcaagaaatgcttgaaacagcatccatcttgaaaggtgcatctgagaag
tctcttataattatcgatgagttggggcgcggaacttccacatatgatggatttggtctt
gcatgggctatctgtgaacatcttgttgaagtaactagagctcctacattgtttgcaact
cattttcatgaattaaccgcattggcaaacaaaaatggtgatcagcaccaacatgttcca
gatgttggaattgcaaattatcatgtgggtgcacatatagacccatcaagtcggaagtta
actatgctttataaggttgaacctggtgcctgtgaccaaagttttggtatccatgttgcg
gaatttgctaattttccagaagctgtcattgctcttgcaaaaagcaaagcagaagagtta
gaagacttctctgctgcacccaacttcaatgatgaatcaaatgacgaggttggatctaaa
cgcaagagggtgtttagcccagatgatgtgaccaggggagctgctcgagcccgcgttttg
ttggaagagttctcggcattgcctctagatgagatggatgggagaaaggccacggaggtc
gtgaccaaactgaaattggacttcgagaaagatgcagccggtaatccctggcttcagcag
ttcctctga
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