Brachypodium distachyon (stiff brome): 100842689
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Entry
100842689 CDS
T01717
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bdi03036
]
100842689
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
100842689
microRNA pathway
RISC loading complex
100842689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
dsrm
DND1_DSRM
Helicase_C
DEAD
ResIII
Dicer_PBD
SNF2-rel_dom
SLFN-g3_helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100842689
NCBI-ProteinID:
XP_010229289
UniProt:
A0A0Q3P1P0
LinkDB
All DBs
Position
1:73701084..73713122
Genome browser
AA seq
1930 aa
AA seq
DB search
MAGGGGGAGAGEHAAAAYWYDACEDGASLLCGIDFAASADFDPGLMPAMDSGVDDGFVAE
IDRILESINAESTPAPPPPQQQQALVDPSPQPPVEQGQEAAVAVADNAVEVVGSGQRIQG
AETRKEMKKESHSSSTNGSSANGGDRRDQKRPPLASGVASGPRPDWRRRPMPPPPSRGLE
DRRGRRDFDRPRKRDRDGHSGSEHHRREARGFWERDRGGKMVFRPGTWEKESDREAKRAR
TQDGGSVEKKAEADRAGAAQRAKPVAEEQARHYQLEVLEQAKSRNTIAFLETGAGKTLIA
VLLIKSICDKMLKENKKMLAVFLVPKVPLVYQQAEVIRERTGYRIGHYCGEMGQDFWDAR
KWQREFDSKQVLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHT
TPKDKRPVVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPF
EVVIHYDKAATLCSLHERIKQMEAAVEEAALSSSKRTRWQFMGARDAGSREELRLVYGVS
ERTESDGAANLIQKLRAINYGLGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESYL
KKVVDLLHCQLTEGAAMKSETNDVEMHSTENHNSSELEDGELPDSHAVSVGEHVDEVIGA
AVADGKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVFAELPSLSFIRCASL
IGHNNNQEMRTSQMQDTIAKFRDGRITLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYI
QSRGRARKPGSDYILMVERANLSHETFLRNARNSEETLRKEAIERTDLSHLDGIPMLNPI
HTSPDSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMQKHEKPGGSVEYS
CKLQLPCNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMSAFTDMLLPDRGIGEGEKTE
QNDEGDPVPGTARHREFYPEGVAEVLRGEWILSGRDCCQSSQFIKLYMYYVNCVDVGTSK
DPFLAQLSNFSIVFGNELDAEVLSMTMDLFVAKTMITKASLVFHGPIEITERQLVLLKSF
HVRLMSIVLDVDVDPSTTPWDPAKAYLFVPVGAEKCTDAFREIDWTLVNSIVNTDAWNNP
LQKARPDVYLGTNERTLGGDRREYGFGKLRNGTTFGQKAHPTYGIRGAIAEFDVVKASGL
VPARDRGFLNDSQKHGKLFMADSCWDAKDLAGMVVTAAHSGKRFYVDSICYNMNAENSFP
RKEGYLGPLEYSSYADYYKQKYGVELVYTKQPLIRARGVSYCKNLLSPRFEHSEAKEGVN
FSENHDKTYYVYLPPELCVVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKEIIDYPVPA
TKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNM
VLYQFALNKTLQSYIQADRFAPSRWAAPGVLPVFDEETRESEPSIFGEEPVLGNEVQKDF
DDDYADSIQEDGEIDGDSGCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHA
ELDPQEIPPPKIYNIPDSIMRSINFDTLESIMGIKFQNKGFLVEAITHASRPSSGVSCYQ
RLEFVGDAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS
SALETQIREFVKDVREEISKSGFNSFGLGDCKAPKVLGDIIESIAGAIFLDSGYDTSAVW
KVFQPLLDPMVTPETLPMHPIRELQERCQQQAEGLEYKASRAGNVATVEVFVDGIQIGVA
QNPQKKMAQKLAARNALVVLKEKESAEAKETEKDDDKKNGAHVFTRQTLNDICLRRQWPM
PQYRCINEGGPAHAKRFVYAVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNGS
FPDKSDGKKP
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atggctggaggaggcggcggcgccggggccggcgagcacgcggcggcggcctactggtac
gacgcgtgcgaggacggggcgtcgctgctgtgcggcatcgacttcgccgcgtccgccgac
ttcgacccgggcctcatgcccgccatggacagcggcgtcgacgacggcttcgtcgccgag
atcgaccggatactcgagagcatcaacgcggagagcacccccgcgccgccgccgccgcag
cagcagcaagcgcttgtggacccctcgccgcagccgccggtggagcaagggcaggaggct
gctgtggccgtggccgacaatgccgtggaggtggtgggctcagggcagaggatccagggc
gccgagacgaggaaggagatgaagaaggagtcgcacagcagttccacgaatggcagttcc
gcgaatggcggggaccggagagaccagaagcgtccgcccctcgcctctggggtcgccagc
gggccgcgccctgattggcggcggcggccgatgccaccaccgccctcgcgtggattggag
gatcggcgtgggaggcgcgacttcgacaggcctcgcaagcgcgaccgcgacggccactct
ggctccgagcatcaccggcgcgaggctcggggattttgggagcgtgaccgcggcggtaag
atggtgttccggccgggcacttgggagaaggagtctgaccgcgaggcaaagcgtgccagg
acacaggacgggggttctgtggagaagaaagcagaggcggatagggcgggggcagcgcag
agggcgaagcctgtcgctgaggagcaggcgaggcattaccagttggaggtgcttgagcaa
gcaaagagcaggaacaccatagcctttctcgagaccggcgccgggaagactctcattgct
gtgctgctcatcaaaagtatatgtgacaaaatgctcaaggagaacaagaagatgcttgct
gtcttcttggttcccaaggtgcctcttgtgtaccagcaagcggaagtgatacgcgagagg
actggctatcggattgggcattactgcggagagatgggtcaggatttctgggacgctaga
aagtggcagcgtgagtttgattcaaaacaggtactagttatgacagctcaaattttgtta
aacatcctcaggcacagtattattaaaatggatgcgatacatcttttaattttagacgag
tgccatcatgcagtgaaaaaacatccttattctctagtgatgtcagaattttatcacacg
actccaaaggataagagaccagttgtttttggtatgacagcttctcctgtcaacctaaag
ggagtcactagccaagaggattgtgccatcaagataagaaatcttgagagtaaacttgat
tctgtagtttgtactataaaagatcggaaggagcttgagaaacatgtccccatgcctttt
gaagttgttatccattacgacaaagcagccactctttgttccttgcacgagcggatcaaa
caaatggaagctgcagttgaagaagcggcactctctagctctaagagaaccaggtggcag
tttatgggagcaagggatgctgggtctagagaggagctgcgccttgtctatggtgtttct
gagcgtacagaaagtgatggtgcagctaatttgatccagaagttgagagctataaattat
ggtttaggtgaactaggacaatggtgtgcttacaaggttgcacagtccttcttgacagcg
ttacaaaatgatgaaagggcaaactatcaggttgatgtaaagtttcaggagtcctattta
aagaaggttgttgatttgttacactgccagttgactgaaggagctgcaatgaaaagcgag
actaatgatgttgagatgcatagtactgaaaaccataactcaagtgaacttgaggatggg
gagctacctgacagccatgctgtttcggtaggtgaacatgtagatgaagtcatcggagct
gccgtggcagatgggaaagttacccctagggtgcaggctttgatcaaaatccttctcaag
taccagcataccgaggatttccgtgctatcatctttgtggagcgggttgtcacggcatta
gttcttcctaaggtgtttgcggagcttccatctttaagctttattcgatgcgctagcttg
ataggccataacaacaatcaagagatgcgcacaagccaaatgcaggatacaattgccaaa
tttcgcgatggccgtattacattgttagttgcgactagcgtcgcagaggaagggcttgat
attcgacagtgcaatgttgtcattcgctttgaccttgcgaagactgtcttggcctacata
cagtctcggggtcgtgcaaggaagcctggatctgactacatattgatggtcgaaagggca
aatttatcacatgaaactttcttgaggaatgctcgaaatagtgaggagacgttaagaaaa
gaagctatagaaagaactgatctcagtcatcttgatggcattcctatgttaaatcctatc
catacatctcctgattcgatgtatcaggtggaatcaacaggtgctgttgtcagcttgaat
tctgcagttggactcatacatttttactgttcacagcttccaagtgacaggtactcaatt
cttcgtccagaatttattatgcaaaaacatgagaaaccagggggttccgtggaatattct
tgcaaacttcaactcccctgcaatgcaccatttgagaaacttgagggtcctatatgcagc
tcgattcgtctggcacagcaagctgtttgtttggctgcctgtaagaaactacatgagatg
agtgccttcacagatatgcttttacctgatagaggaattggggaaggagaaaagactgaa
cagaatgatgaaggtgatccagtccctggaacagcacggcatagagagttttatcctgaa
ggtgttgcggaagttctgagaggagaatggattttatctggaagagattgctgccaaagc
tctcaatttattaagttgtatatgtattacgtgaactgtgtggatgtggggacatctaag
gaccccttccttgcacaactttcaaatttttctatagtttttggcaatgagctggatgca
gaggttttatcgatgacaatggatctctttgttgccaagacaatgataacaaaggcatct
cttgtattccatggaccaattgaaattacagagagacagttggtattgctgaagagcttt
catgttaggctcatgagtatagtccttgatgttgatgtcgatccctcaactacaccttgg
gatccagcaaaagcgtacctctttgtccctgtaggagctgagaagtgtacagatgctttc
agagagatcgattggactttagtcaacagcattgtgaacactgatgcctggaataatcca
cttcagaaggcacgcccagatgtctacctaggcaccaatgagcggacacttggtggagat
aggagagagtatgggtttgggaaattacgtaatggaaccacttttggacagaaggcacat
ccgacttatggtattagaggagccattgctgagtttgatgttgtcaaagcatctggatta
gttcctgctcgtgacagagggtttcttaatgactctcagaaacacgggaagttgttcatg
gcagattcatgctgggatgctaaagatcttgctggaatggttgtcactgctgcccactca
ggaaagaggttctatgtggactctatttgttataacatgaatgcagaaaattcatttcct
aggaaggaaggctacctggggcctttggaatatagctcgtatgctgattactacaagcag
aaatacggcgtggagctagtgtatacgaaacaacctcttatacgtgcacgtggtgtttcg
tactgcaagaatctcctgtctcctagatttgagcattctgaagctaaagaaggtgtcaac
ttttctgagaaccatgacaaaacatactatgtgtatctaccacctgaactgtgcgttgtg
caccctcttcctggatcacttgttcgtggagctcagaggttgccttcaataatgagaagg
gttgagagcatgcttcttgcagttcagttgaaggaaataattgattatcctgttcccgca
acgaagatattagaagccttgactgctgcatcatgccaggaaacgttttgctatgaaaga
gcagagctactgggtgatgcatacctgaaatgggttgtgagtagattcctttttctaaaa
tatcctcagaagcatgagggacagcttacgaggatgcggcagcagatggttagtaacatg
gttctgtaccaattcgctctgaataaaactcttcagtcgtacattcaagcagatcgtttt
gccccatcaagatgggcagctccaggagtgctacctgtatttgacgaggagacaagagaa
tctgaaccatccatctttggtgaggaaccagttcttggtaatgaagtacagaaggatttt
gatgacgattacgcagatagcatccaagaagacggtgaaattgatggagattctggctgc
tatcgtgttctctcaagcaaaactttagcagatgttgttgaagcacttattggggtctat
tatgtagcaggagggaaaattgctgcaaaccacctgatgaagtggattgggattcatgca
gagctggatcctcaagagatccctcctccgaagatatataatatacctgatagcataatg
agaagcatcaactttgacaccttagaaagcatcatgggtatcaaattccagaataaaggt
tttctggttgaggctataacgcatgcatcgaggccgtcttctggtgtttcctgttaccag
cggttggaatttgttggtgatgctgtgttggatcatctcatcacaaagcatttgtttttt
acatatactgatctacctcctggtcgcttaaccgacttgagagctgcggctgttaataat
gagaactttgcaagggttgcagttaagcataagctgcatgtacatcttcgccatgggtca
tctgcgctggaaacacagattcgggagtttgtgaaggatgtccgagaagagatttcaaaa
tcaggtttcaattcttttgggcttggggactgcaaggctcctaaagttcttggagacatt
attgagtctattgctggtgcaatatttctcgatagtgggtatgacacctcggcagtctgg
aaggtttttcaaccgcttcttgatcctatggtaacgccagaaacccttcccatgcatcca
attagggagctccaagaacgctgccagcagcaagctgaaggcttagaatacaaagcatcc
cgagcaggcaatgtagctactgttgaagtcttcgtggatggtatccagattggtgtagct
cagaacccgcagaagaagatggcacagaagttggcggcgaggaatgcacttgtggtcctg
aaggagaaggaaagcgcagaagccaaggagaccgaaaaggatgacgataagaagaacggt
gctcatgtgttcaccaggcagaccctgaacgacatctgcttgagaaggcagtggccgatg
ccacaatacaggtgcataaacgagggcggccctgctcatgctaaaagatttgtctacgcg
gtaagggtgaacacatctgatcgtggatggaccgacgaatgcattggagagccaatgcct
agtgtgaagaaggccaaggactctgctgccgttcttctccttgagcttctgaatggaagt
ttccctgacaagtctgacggcaaaaagccctag
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integrated database retrieval system
