Brachypodium distachyon (stiff brome): 100842761
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Entry
100842761 CDS
T01717
Name
(RefSeq) uncharacterized ATP-dependent helicase C29A10.10c
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100842761
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100842761
5.6.2.5 RNA 5'-3' helicase
100842761
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100842761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
UvrD_C_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
100842761
NCBI-ProteinID:
XP_010234601
UniProt:
A0A0Q3F8N5
LinkDB
All DBs
Position
3:20367039..20378592
Genome browser
AA seq
1369 aa
AA seq
DB search
MGSRGRILFDLNELPTEAEEEEAAVVVSQPQLPVPTVYPSTLFPPQKVPQSQGILNNHAF
KHASSGSGFQPFVRTKDSENLKEPIKTEKKLDTTAASTSTVTNHVSDSVAQHAEPSNQVS
QAVEREEGEWSDADGASDTAGSSLSNKEESSGTASTQVKRDSPEREPATVKSCGVIKDDT
AAEPSDTEMADVSKDPVLRAPTGLEPLKNLDCKGNQPGDDLDPCNRSKDVRGVEANYALK
FTNNPAKRPKLDEHKVAMLGKKRARQTVFINVEDAKQAGTMKTITPRRQSSFPAPIVTRT
VKEASRGVGERAAEKQSMPVIRDQRQTDMVGSERSNSADPSDQNGESNGDVELGTLGKSK
KINGEEPPSDGFPQSVPRQASSKQPLDSKQFKGRPLSSQRGVLTGQNTADQKQANKRSLV
PKKQASSNSTQYNDTSVERLIREVTSDKFWHNPEEEELQSVPGSFDSAEEYIRVFEPLLF
EECRAQLYSSYEESLEAVSRDAHVMVRVKSVDRRERGWYDVVVLPTHEYKWIFKEGEVAV
LSFPRPGPASQSSRSNRKAVASNEDAEAECGRLVGTVRRHMPIDTRDPIGAIIHFHVGDS
FDSSSNETNVLRKLQPRSTWYLTGLGSLATTQREYVALHAFRRLNMQMQNAILQPTPEQF
PKYQEQPPAMPDCFTPNFSDHLNRTFNGPQLSAIHWAAMHTAAGTSNGVVKKQEPWPFTL
VQGPPGTGKTHTVWGMLNVIHLVQYQHYYAALLKKLAPESYKQVASSTSSSSEVFAAGSI
DEVLQSMDQNLFRTLPKLCPKPRMLVCAPSNAATDELLSRVLDRGFIDGEMKVYRPDVAR
VGVDTQSRAAQAVSVERRTEQLLMKGRDEVIGWLQQLKGREQQLSQEIALLQRELNMVAA
AGRSQGSVGVDPDMLANRDRNRDMLLQKLAASVESRDKVLVEMSRLLILESRFRGGSNFN
LEDARSSLEASFANEAEIVFTTVSSSGRRLFSRLSHGFDMVVIDEAAQASEVGVLPPLAL
GAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTILLSVQYRMHPQIREFP
SRYFYQGRLTDSESVVKLPDEAYYRDALMSPYIFYDISHGRESHRGGSSSYQNVHEAQFA
LRLYEHLQKLMKANGGKKVSVGIITPYKLQLKCLQREFEEVMNTEEGKDIYINTVDAFQG
QERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVVGNANALMQSEDWAALVTDA
KARKCFMDLDSIPKDFLAMKISSNTPGRNSSNNTRNMRTGGPRPRHLDMLPDPRNGMRAD
EDERPNSVPRNASYRNLDDLGRPGDRSRENLQFGMPRRPNSSNGSRREV
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggggtctcgtggaaggatattatttgatctcaatgagctcccaacagaagctgaagaa
gaagaagctgcagtcgttgtgtcccaaccgcaacttcctgttcccactgtatatccctca
actttatttccaccacagaaagtgccacagtctcaagggatattgaacaaccatgccttt
aagcatgcatcctctggttcaggttttcaaccttttgtgagaaccaaagattcagaaaat
ttgaaggaaccgatcaaaacagaaaagaagttggacactactgctgcttctacatctacg
gtaacgaatcatgtatctgatagtgtcgcacaacatgctgagccctcgaatcaggtttca
caagcagttgaaagagaagagggagagtggtctgatgcagatggtgcttctgacactgca
ggaagtagtctcagcaacaaagaagagtcgtctggtactgcaagtactcaagtgaaaaga
gattccccagaaagagaacctgctactgttaagtcttgtggtgtgattaaagatgacact
gctgctgagcctagtgacactgagatggctgatgtgtctaaagatccagttcttcgtgct
ccaacaggactagagcctctgaaaaatttagattgtaaaggaaatcaacctggggatgat
ttagacccatgcaacaggtcaaaggatgtcagaggagtagaagccaattatgcattgaag
tttacgaacaaccctgcaaagaggcctaagttggatgagcacaaagtagcgatgcttgga
aagaagcgagccaggcagactgtgttcattaatgttgaggatgcaaaacaagctggcaca
atgaaaaccataacacccaggagacaatcatcttttccagcaccaattgttacacgtacc
gtgaaggaagcttctcgtggtgttggtgaaagagctgcagaaaaacagagcatgccagtc
atcagggatcagagacaaactgatatggtcggttctgaaagaagtaattctgcagatcca
agtgaccaaaatggtgaatccaatggtgatgttgagttgggaactttgggcaagtcaaag
aaaattaatggtgaagaacccccctcagatggctttcctcaatctgtgccaaggcaggct
tcttcgaagcaaccattggattctaagcagttcaagggcagaccactctcttcccagaga
ggagttctaacaggacaaaataccgcagatcagaaacaagccaacaaaaggtctcttgtt
ccaaaaaaacaagcttcatcaaatagcacacagtataatgacacatctgttgaacggctt
atacgggaagtgacaagtgacaagttctggcacaatcctgaggaggaagaacttcagtct
gtccctggaagctttgattctgccgaggagtacattagagtttttgagcctttgcttttt
gaggaatgcagagctcagctatatagttcctacgaggagagtcttgaggctgtatcaaga
gatgcacatgtaatggtgcgtgtaaagagtgtggataggcgtgaaagaggatggtatgat
gttgttgttctaccaacacatgaatataaatggattttcaaagaaggtgaagttgcagtt
ttgtcgttccctcggcctggtccagcttcccaatcaagtagatctaataggaaggctgtt
gcttcaaatgaagacgctgaagcagaatgtggacggcttgtaggtacagtcaggcgccat
atgcctattgatacacgtgatcccattggagcaataatccattttcatgttggggattca
tttgattctagcagcaacgagactaatgttctgaggaaactccaacctcggagtacctgg
tatctaactggtctcggttcccttgcaacaacacagagggaatatgtagcattgcatgct
ttccgcagacttaatatgcagatgcaaaatgcaattcttcagccaactccagagcagttc
cccaagtaccaagagcagccacctgctatgcctgattgtttcactccaaatttttctgat
catctcaatcgtactttcaacgggcctcagctatcggcaattcattgggctgcaatgcat
acagctgctggcacaagcaatggagtagtgaagaaacaagaaccatggcctttcacatta
gtacaaggtcctccggggactgggaaaacacatactgtgtggggaatgttaaatgttatt
caccttgttcagtatcaacattactatgcagctctcttaaagaaacttgctcctgaaagt
tacaagcaagttgctagtagcactagcagcagttcagaggttttcgctgcagggtctatt
gatgaagttttgcagagcatggatcagaacctgtttcgcactcttcccaaactttgtccc
aaaccacggatgcttgtgtgcgccccatcaaatgctgcaacagatgagctgctttctcgt
gttcttgaccgaggtttcatagatggtgagatgaaggtctaccgccctgatgttgctcgt
gttggagttgatacacagtctcgtgctgcccaagctgtttcagtggagcgacggacagaa
cagcttttaatgaagggccgtgatgaagtaattgggtggttacagcagctaaaaggacgc
gagcagcagttatctcaggagatagcccttttacagagggaacttaatatggttgcagcg
gcaggtagatcccagggttcagttggggtagatcctgatatgcttgccaacagggatcgt
aaccgtgatatgctgcttcaaaaacttgctgcctcagtagaaagcagggataaagtactt
gtagagatgtcgcgcctgctgatattagaaagcaggttccgtggtggtagtaacttcaat
ctggaagatgctaggtctagtctggaagccagttttgccaatgaagcagaaattgttttt
acaacagtgtcaagcagtggccgcaggttattttctcgccttagtcatggttttgatatg
gttgttatcgatgaggctgctcaggccagtgaagtaggagtcctccctccacttgcactt
ggtgcagctagatgtgtcttggttggtgacccacagcagctccctgccactgttattagc
aaagcggctggaactttactatacagcaggagtctttttgagaggtttcagcaggctggt
tgccctaccattttgttgtctgtgcaatatcggatgcaccctcagatccgtgagtttccc
tcaagatacttctatcaagggcgtcttacagacagtgaaagtgttgtcaaactgcctgat
gaggcttattacagagatgcattaatgtcaccttacattttctatgatatttcacatggt
cgtgagtctcatagaggggggtcatcttcataccagaatgttcatgaagcacagtttgca
ttgcgtttgtatgagcatcttcagaagctcatgaaagctaacggtggcaagaaagtatct
gttggtataatcactccatataagttgcagttgaagtgtcttcagcgggaattcgaggag
gttatgaatactgaggaagggaaagatatctacataaacacagttgatgcttttcaaggc
caggagcgtgatgtgattattatgtcttgtgtccgtgcttcaaaccatggcgtgggtttt
gttgcagatatacgccgtatgaatgttgctcttactcgagctagaagagctctgtgggtt
gtcggtaatgccaatgctctcatgcagtcagaggactgggcggcattggtaacagatgca
aaggccaggaaatgtttcatggacctggatagcatccccaaggatttcctggccatgaag
atttcatccaacactccaggcaggaactcttcaaataacacaaggaacatgaggactggt
ggaccaagaccgaggcatctggacatgcttccggaccccaggaatggcatgagggctgat
gaggatgagcgtcccaactctgttccaagaaatgctagttaccgcaatttggatgatctg
ggacgccctggtgatagatctagggaaaatttgcagtttggaatgcccaggaggccaaat
tcatccaatggttctaggcgagaagtctga
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