Brachypodium distachyon (stiff brome): 100843243
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Entry
100843243 CDS
T01717
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100843243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100843243
Spliceosome [BR:
bdi03041
]
Complex B
Other components
Prp19-related factors
100843243
Complex C
100843243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
zf-CCCH
zf-CCCH_3
RRM_YTH1
zf-CCCH_10
RRM_3
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
100843243
NCBI-ProteinID:
XP_003564252
UniProt:
I1H0M4
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All DBs
Position
1:46905815..46909472
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AA seq
488 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRKAAAGIDYDSSYGKSRPNDTILKLQRTSPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLTPPDDESIRTLYIGGLDNRVT
EQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPRADDDEAGRQGHVSHGGLLPRAVISQQHSSDQPQPPGMEGQQQAAPASYYFNIPAP
PATERTMYPSMDPQRMGAVVRSQEGDSGPQHAGQAQPSSSSGQGYPMRPPVAYYHGQYPP
YYPPPPPYGGYTQPPRMPYPPQYPPYQPMLAPPAQPQQASSSQQPAPGPAGQQQAAQAPP
TQQPAAQN
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggctgctgcgggacgcgcaggcggacgggtgggagcggtcggacttcccc
atcatctgcgagtcctgcctcggcgacaacccctacgtccgcatgttaagagcagaatat
gacaaagaatgcaaaatatgtgcacgtccttttactgtcttccgttggcgacctggtcgg
gatgcaaggtacaagaagacggagatctgtcagacatgctgcaagttgaaaaatgtctgc
caggtctgcctgctagaccttgaatatggtctaccagttcaggttcgggatacagcactt
gcgatcaattcaaatgatgcaatcccaaggagtgatgtcaaccgagagtacttcgccgaa
gagcatgatcgtaaggccgctgctggcatagactatgactcttcctatggaaagtcccgt
ccaaatgatacaattctgaagcttcagaggacatcaccatattacaagaggaaccgagct
catgtttgcagtttctatgtgcgtggtgaatgtacaagaggcgctgaatgcccgtatcgc
catgagatgcctgagactggggagttatcccagcagaacatcaaagatcgttactatgga
gttaatgacccagttgctctgaaacttttgggtaaggcaggtgaaatgccatccctgaca
ccaccagatgatgagagtataaggaccctctacattggtggacttgataaccgagtcacg
gagcaggatttgagggatcagttctatgcacatggtgagattgaatccatcaggatggta
ctccaacgtgcatgtgcatttgtaacatacacaacgagagaaggtgctgagaaagctgca
gaggagcttgccaacaagctagtcatcaagggtgtgcgcctgaagctcatgtggggcaag
ccgcaagcaccaagggcagatgatgatgaggctgggaggcaaggtcatgtttcccacgga
ggactgctcccgagggctgttatatctcagcagcatagcagcgaccagcctcagcctcct
gggatggagggccaacagcaagcggcacctgcatcatactacttcaacatcccagcaccg
ccagcgacggagcggacaatgtacccttcgatggacccccagaggatgggtgctgtagtc
aggtcacaagagggcgacagcgggccacagcatgctgggcaagctcagccgtcaagcagc
tcaggacagggctaccctatgcggccaccggtggcctactaccacggtcagtatcctcca
tactacccaccaccaccaccatatggcggctacacgcagccacctcgcatgccataccca
ccgcagtatccgccatatcagccgatgttggcgccaccagcacaaccacaacaagcaagt
tcgtcccagcaaccagcgccaggaccagcagggcagcagcaggcagctcaagcccctcct
actcagcagccagcagcccagaactga
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integrated database retrieval system
