Brachypodium distachyon (stiff brome): 100843279
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Entry
100843279 CDS
T01717
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X2
KO
K14829
pre-rRNA-processing protein IPI3
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bdi03009
]
100843279
Ribosome biogenesis [BR:
bdi03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
100843279
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
EIF3I
NBCH_WD40
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_CAF1B_HIR1
Beta-prop_IP5PC_F
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_RIG_1st
Beta-prop_VPS8
WDR54
Motif
Other DBs
NCBI-GeneID:
100843279
NCBI-ProteinID:
XP_003573656
UniProt:
I1I2K9
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Position
3:complement(18736653..18741018)
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AA seq
422 aa
AA seq
DB search
MAPPSQQLVFAASSTDAGVAAWDLRTGAEAIRHRPCASRPRALVAVADRFLAAAQAPAGN
SAPIYYYHWDKPQVAVKSFPTEPIRALIADPEGSYLIGGGVSGDIFFWEVATGELLVRWH
AHYRDVRCLALYDLLLVSGSEDGSIKVWDLITMLDELARSEAKTPYLYSFNQHALPVTDI
ACFHGAIAVSSSEDRTCKIWNLSEGRMIRSISFPAIIDSIELDPRSHIFYAGGRDGKIYV
TAMGVDVTSQGSGDSSILGALDDHSKGVTSLASSTDGLLLVSGSEDGSVRVWDTRTQQVT
RKFKHSQGPVTNVLIVTPKRVNLPPLQPLRKVCAANGEVEPQAVILPDPENDVHIAEYRS
SNLLERCLDSLQHGNSSLFDSGASTLNGMPNQLGTEWRSKYLELQDLFVHQVLGQTPSSM
DT
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccgtcgcagcagctggtgttcgcagcctcctccaccgacgctggcgtggcc
gcatgggatctccgcacgggcgctgaggccatccgtcaccgcccctgcgcctccaggcca
cgtgccctcgtagccgttgccgaccgcttcctcgccgccgcccaggcccccgccggcaac
tccgcccccatctactactaccactgggacaagccacaggtggccgtgaagagcttcccc
accgagccaatccgcgcgctcattgctgacccggaggggagttatctcattggaggcggg
gtttccggtgacatattcttttgggaggtggctactggagagcttcttgtccgatggcat
gcacactatcgtgatgttaggtgtcttgccctctatgacttgttgctcgtctcggggtct
gaagatgggagcatcaaagtttgggatcttatcacgatgcttgatgagctggcaaggtca
gaggcaaagacaccatacttgtatagcttcaatcagcatgcacttcctgtaactgacatt
gcttgtttccatggagcaattgctgtatcgtcttcagaggatcgcacctgtaaaatttgg
aatctatctgagggcaggatgataagaagtatttcatttcctgctatcattgattccatt
gaactagacccaagaagtcatattttctatgctggtggtagagatggaaagatatatgtt
actgctatgggtgttgatgtcacctctcagggcagtggtgattcatctattcttggcgct
ttggatgaccacagcaagggagtgaccagcttagcatcaagcacagatgggcttctacta
gtctccggatcagaagatggcagtgttcgggtttgggataccagaactcagcaagtaacc
aggaaattcaaacattctcaaggtccagtaactaatgttctcatagtaacacccaagaga
gtaaatctgccacccctgcaaccactgcgtaaagtttgtgcagcaaatggagaagttgaa
ccacaagctgtaattctgcccgaccctgaaaatgatgttcacattgctgaatatcgcagc
tctaaccttctagagcgttgcttggattcacttcagcacggcaattctagtttatttgat
tctggggcgagcactctcaatggcatgccgaaccaactagggacagaatggagaagtaaa
tacctagagttgcaagatctttttgtgcatcaggttctaggtcagacgccatcttcaatg
gacacatga
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