Brachypodium distachyon (stiff brome): 100843366 Help Entry 100843366         CDS       T01717                                  Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism bdi  Brachypodium distachyon (stiff brome) Pathway bdi03030   DNA replication bdi03410   Base excision repair bdi03420   Nucleotide excision repair bdi03430   Mismatch repair Brite KEGG Orthology (KO) [BR:bdi00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     100843366    03410 Base excision repair     100843366    03420 Nucleotide excision repair     100843366    03430 Mismatch repair     100843366  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:bdi03032]     100843366    03400 DNA repair and recombination proteins [BR:bdi03400]     100843366 Enzymes [BR:bdi01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      100843366     6.5.1.6  DNA ligase (ATP or NAD+)      100843366     6.5.1.7  DNA ligase (ATP, ADP or GTP)      100843366 DNA replication proteins [BR:bdi03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     100843366  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      100843366 DNA repair and recombination proteins [BR:bdi03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      100843366    NER (nucleotide excision repair)     Other NER factors      100843366    MMR (mismatch excision repair)     Other MMR factors      100843366 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HVO_A0114 Presenilin Motif Other DBs NCBI-GeneID:  100843366 NCBI-ProteinID:  XP_003571920 UniProt:  A0A0Q3HUL9 LinkDB All DBs Position 3:complement(31360854..31368746) Genome browser AA seq 918 aa AA seqDB search MFLLRATATTPLHLLRCHPLPSPKTLATTLAHPPPLLLRPRLYSSASPRRRSITATPSVA KSSEKKPPARPKRAEAVLPLAAANAGAEAMSSSGGAGGKRSVADVLMGNARDAARKAKKG AAGASGAAPSPKKPRAKTTAQGDDAAVEQAVAEKPPSPAKSKRPLSPAKAKSQAETSPAE KKRSPSPTRSKKLAAAPKLEAEEKPPSPKRLKTLAAKSDAKLSDDALLSQSDEKQKRTSP SPTKAKGQASQSEDKTRPSSPKKSKTSNATKSEERNTTFELKKKGSEFDPMAAAYWKPTE PVPFLFLAQALDLISNESGRIVITEILSNVFRTIIATTPEDLLATVYLSANRIAPPHEGI ELGIGDASIIRALAEAYGRKEEHVKKNLKELGDLGLVAKASRLSQKMMYKPKPLTIARVL DTFRTIAKESGKDSQDKKRSHIKGLLVAATDCEPQYIIRLLQSKMRIGLAEKTVQMALGQ AAVYSEEGSPPAKVQSPFEEAAKIIKQAYSVLPIYDRIVPTLLEAGVWKLPETCNFSIGV PVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIHCMEDGSVEIYSRNAERNTGKY PDVVDAVSRFRKPAVKSFVLDCEIVAYDREKKKILPFQILSTRARKGVTINDIKVSVCTF GFDILYINGKPLLQEQLKVRREHLYNSFEEVPGIFQLATAITSNDLEEIQKFLDVAVNSS CEGLIIKTLDKDATYEPAKRSNNWLKLKKDYMDSVGDSLDLVPIAAFHGRGKRTGVYGSF LLACYDEQNEEYQTICNIGTGFSEQQLEERSTSLRSKVISKPKAYYRFADTTDPDVWFEP SEVWEVKAADLSISPVHRAANGIVDPNKGISLRFPRLLRVRDDKNPEHATTSEQVADMYR AQKINHSHNQDDEDDDRD NT seq 2757 nt NT seq  +upstreamnt  +downstreamnt atgttcctccttcgagccaccgccaccaccccgctccacctgctccgatgccacccgctc ccctcgcctaaaaccctagccaccacgctcgcacacccgcccccgctcctcctccgcccc cgcctatactcgtcggcctccccccgccgccgctcaatcaccgccaccccctctgtcgcc aaatccagcgagaagaagccgcccgcgagaccgaagagggcggaggctgtgctgccacta gccgcggccaacgcgggagcggaagccatgtcgtcctcgggcggcgccggggggaagcgc tccgtggcggatgtgctcatggggaacgcgcgggacgccgccaggaaggcgaagaagggg gccgcgggcgcctccggggcggcgccgtccccgaagaagcccagggcgaagaccaccgcc cagggcgacgacgcggctgtcgagcaggcggtggcggagaagccgccttcgccggcgaag tcaaagcgcccgttgtccccagctaaggccaagtcccaggctgagacctcgcctgccgag aagaagaggtcgccgtcgcccacgaggtccaaaaagctagccgcggcccctaaattggag gccgaggagaagcccccttcaccaaagaggttgaaaaccctagcggctaaatctgacgcc aagctctctgacgacgcccttctctcgcagtctgacgagaagcaaaagaggacatcccca tcgccgaccaaggctaaaggccaagcgtcccaatccgaagataagacgaggccctcatca ccgaagaagagcaaaacctcaaatgccaccaagtccgaggagaggaataccacttttgag ctcaagaagaaaggcagtgaatttgatcccatggctgctgcctattggaagcccactgag cctgtgcccttcctgttcctggctcaggcgcttgatctcatctccaacgagtctggccgg attgtcattacagagatcctgtcgaatgtgttccggacgattattgccaccacaccagaa gatctccttgcgacagtatacctctcagccaaccggattgcgccaccccatgaggggatt gagcttggaattggggacgcatcaatcattcgtgcacttgctgaagcatatggtcgcaaa gaggagcatgtcaagaagaacctcaaggaattgggagatttggggcttgtggcgaaagca agcaggttgtcacagaagatgatgtacaagccaaaaccactgacaatagcacgtgtgctt gatacctttcggacaattgccaaggagtccggcaaagatagtcaagataagaaaagaagt catatcaaaggacttcttgttgctgcaacagactgtgaacctcaatatattatacgcctt cttcagtcaaagatgcgtattggcttggcagagaaaactgtccaaatggctcttgggcaa gctgctgtatattctgaagaaggatccccgccagcaaaagttcaatcaccctttgaagag gccgcaaaaataattaaacaagcatattcagttcttcctatctatgatagaattgtaccg actcttcttgaagccggtgtctggaaacttccagaaacatgcaatttctccataggtgtc cctgttggccctatgttggcaaaagcaacaaaatctgtttcagagatcatcgacaagttc caaggacttgagtacacttgtgagtacaagtatgacggtgaacgggcccagattcattgc atggaggatggatcagtagagatttatagtcggaatgctgaacggaacactgggaagtat cctgatgttgttgatgctgtttctagattccgaaagcctgcagtcaagtcatttgtgttg gactgcgaaattgttgcttatgaccgtgaaaagaagaaaattttaccttttcagatactt agcacaagggcccgcaagggtgttaccataaatgacatcaaagtgtcagtctgtactttt ggctttgatattctttacatcaatgggaaacctcttctccaggaacaactcaaagttcgt cgagagcatctttacaactctttcgaggaagtacccggtatttttcagttggcaactgca attacatcaaatgacctcgaggagatacaaaaatttcttgatgtagctgtcaactccagt tgtgaagggttgattatcaagacattggataaggatgctacatatgagccagcaaagcgg tcaaacaattggttgaaattgaagaaagactacatggacagtgttggagactctttagac ttggtgccaattgctgcttttcatggaagaggaaaacgaacaggtgtatatggatcattc ctcttggcatgctatgatgagcagaatgaagaataccaaacaatctgcaatataggtact gggttttctgaacaacaacttgaagaacgatctacgagccttcgaagtaaagtaatatcg aaaccaaaggcatactataggttcgctgacacaactgacccagatgtgtggtttgaaccg tcagaggtttgggaggtcaaagctgctgatttgagcataagtcctgttcatcgtgcggct aatggtatagttgatccgaataagggtatctctctaagatttccacgtctgttgcgagtc cgcgatgataaaaacccagaacatgcaaccacatctgagcaagttgctgacatgtaccgt gctcaaaaaataaaccactcgcataaccaagatgatgaggatgatgaccgagactga

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