Brachypodium distachyon (stiff brome): 100843379
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Entry
100843379 CDS
T01717
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100843379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100843379
03041 Spliceosome [BR:
bdi03041
]
100843379
03036 Chromosome and associated proteins [BR:
bdi03036
]
100843379
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100843379
Spliceosome [BR:
bdi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100843379
Complex B
100843379
Complex C
U2 SnRNP specific factors
100843379
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
100843379
TFTC complex
100843379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
100843379
NCBI-ProteinID:
XP_003574320
UniProt:
I1HX09
LinkDB
All DBs
Position
3:2161588..2167098
Genome browser
AA seq
1228 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDTKKSGAAGSSTQEIAVARGGTLDLLRPDPETGRL
RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS
GCRRIVPGQLLTVDPKGRALCIAALEKQKLVYVLNRDASARLTISSPLEAHKSHTLTFAL
TALDCGFDNPVFGAIELEYGDSDRDPTGQAASHAQKLLTFYELDLGLNHVSRKVSEPIDN
GANLLVTVPGGGDGPSGLLVCCDNFVLYRNQGHPEVRAVIPRRVDLPAERGVLIVAAATH
RQKSLFFFLLQTEYGDIFKVDLEHNGDSVSELRIKYFDTIPVASAICVLRSGFLFAASEF
GNHALYQFRDIGRDVDVESSSATLMETEEGFQPVFFQPRALKNLVRIDEIESLMPIMDMR
IANLFDEETPQVYTACGRGSRSTMRILRPGLAISEMARSMLPAEPIAVWTVKKNINDMFD
AYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVSLLGEDSLMQVHPNGIRHIREDG
RVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLAI
APVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASVGGE
DGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAMLC
LSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIERLGETF
NETAIPLRYTPRKFVILPKKKYLAVIESDKGAFSAEQREAAKRECLEASGAVENGNGNGD
QMENGDGQEDGAEESNTLPDEQYGYPKAESEKWVSCIRILDPRSRDTTCLLELQDNEAAV
SICTVNFHDKEHGTLLAVGTTKGLQFWPKRSLASGFIHIYKFVDEGKSLELLHKTQVEEV
PLSLCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGDMQES
FHYCKYRRDENQLYIFADDSVPRWLTAANHIDFDTMAGADKFGNIYFARLPQDLSDEIEE
DPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVGA
LLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPSLPAD
MQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgcgcgacgggcgccgtgtgcgccgtcatcggc
agcttcagcgggcgcgacacgaagaagtcgggcgccgcgggctcctccacgcaggagatc
gccgtcgcgcgcggcggtacgctcgacctcctccgcccggacccggagacgggccgcctc
cgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctcgcccagttccgcctc
acgggggccaccaaggactacctcgtcgtcggctccgactccggccgcctcgtcatcctc
gagtactcccccgaccgcaaccgcttcgacaaggtccaccaggagaccttcggcaagtcg
ggttgccgccgcatcgtgcccggccagctcctcaccgtcgatcccaaaggccgagcgctc
tgcatcgccgccctcgagaagcagaagctcgtctacgtgctcaaccgtgacgcctccgcc
cgcctcaccatctcgtcccccctcgaggcgcacaagtcccacacgctcaccttcgccctc
acggcccttgactgcggattcgacaaccctgtcttcggtgccatcgagctcgagtatggc
gattctgaccgtgaccccactgggcaggctgctagccacgcgcagaagctcctcaccttc
tacgagctcgacctggggctcaatcatgtttcgcgcaaggtctctgagccgatagacaat
ggtgctaatctgctagtgacagtgcctggtggtggtgatggtccgagcggcctccttgtg
tgctgtgacaactttgtcctgtacaggaaccagggccacccggaggtgcgggctgtcatt
ccacggcgtgttgatctcccggctgagcgtggcgtcctaatagttgctgctgccacacac
aggcaaaagagcttgttcttcttcttactgcagactgagtatggtgatatcttcaaggtt
gacctggaacacaatggtgattctgttagtgagctcaggatcaagtactttgacactata
cctgttgcatcagccatctgtgtgctgcggtcaggtttcctctttgctgcttctgagttt
ggcaaccacgcactttaccagttccgtgatattgggcgtgatgtggacgtcgagtcctct
tcagcaacactgatggagacagaggaggggttccagccagtattctttcagccaagggca
ctcaagaacctcgtccggattgatgagattgagagcctcatgccaatcatggacatgcgt
attgcaaatttatttgatgaggaaacaccccaggtgtacacagcttgcggccgtggctcg
cgctccactatgcgcatccttaggcctggccttgccatcagcgagatggcccgatcaatg
ctgcctgctgagcctattgctgtttggactgtcaagaagaatatcaatgacatgtttgat
gcctacattgttgtgtctttcgccaatgttaccctcgtgctctccattggtgagaccata
gaagaagtcagcgacagccagttcctggacactactcactcactcgcagtttccctcctt
ggcgaggattctctaatgcaggtccacccgaatggaatcaggcacattagggaggatggc
cgtgtcaacgagtggaggacacctggaaagaaaactatcactaaagttggatcaaacagg
ctccaggtggtaattgccctcagtggcggggagctcatctattttgagatggacatgaca
ggtcagctcatggaagtggagaagcaggacatgtcaggtgatgttgcgtgcctggctatt
gctccagttcctgaggggaggcaaaggtcccgttttctggcggttggctcctatgataac
accatacgtatactctccctggaccctgatgactgcttgcagcctctgagcgtacaaagt
gtctcctcagccccagagtcacttttgttcctagaagttcaagcatcagttggtggtgag
gatggtgcagattatccagccaatctttttcttaatgctggcttgcagaatggtgtcctc
ttccgaaccaatgttgacatggtcactggtcagctatcagacactcggtctcgattcctg
ggtctgagacctccgaagctgtttccctgcatagttagccaccgacaagcaatgctttgt
ctgtccagtcgtccctggcttggctatatacatcaaggccacttcctcttgacaccacta
tcatgcgatacacttgagtctgctgcgtcgttctcttctgatcagtgctcagaaggtgtt
gttgctgttgctggagatgccctaaggattttcaccattgaacgcctaggggagacattc
aatgagacagctattcctctgcgttacaccccgaggaaatttgtaattctccccaaaaag
aaatacctggcagtcattgagagtgataagggtgcatttagtgcagaacagcgagaggct
gctaagagggagtgccttgaggcttctggtgcagtggaaaatggaaatggtaatggggat
cagatggaaaatggggatggtcaagaggatggtgctgaggagagtaacacacttcctgat
gaacagtacggttatccaaaggcagaatcagaaaagtgggtttcctgcattaggattctt
gatccaaggagtagggacacaacttgtttgctggaattgcaggacaatgaggcagctgtc
agtatttgcactgtgaatttccatgataaggagcatggtactctcctggctgttggtact
accaagggtctgcagttctggccaaagaggagccttgcttctgggttcatccacatatac
aagtttgtggatgaagggaagtcacttgaacttcttcacaaaacacaagtggaggaagtg
cctctctctttgtgccagttccagggacggttgcttgcaggtgttggttcagtgctcaga
ttatatgatcttggaaagagaaagttgctcagaaaatgtgaaaataagctgttccccagg
acaatagtatctattcatacttaccgtgataggatctacgtcggtgatatgcaagagtca
tttcattattgcaagtacagacgggatgaaaaccagctgtatatcttcgctgatgatagt
gttcccagatggcttacagcagcaaatcacatagatttcgacactatggcaggagctgac
aaatttgggaacatatactttgctcgtcttccccaagatctctcagatgagattgaagaa
gacccaactgggggcaagattaaatgggagcaagggaagttaaatggtgctccaaacaaa
gtggaggagattgtgcagtttcatgttggtgatgttgtcacgtgtttgcagaaggcctct
ctaattcctggtggaggtgaatgtcttatttatgggactgtaatgggtagtgtgggagca
cttcttgcattcacctccagggaagatgttgacttcttctctcacttggagatgcatctc
cggcaggagcatccaccattatgtggaagagatcacatggcctacagatctgcttatttt
cctgtgaaggatgtgattgacggcgacctctgcgagcagtatccatccctcccagctgat
atgcagaggaagattgcagatgagctcgaccgaactccaggtgaaatcctgaagaagctg
gaagacatcaggaacaaaatcatctaa
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