Brachypodium distachyon (stiff brome): 100843648
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Entry
100843648 CDS
T01717
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 3
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03082
ATP-dependent chromatin remodeling
bdi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100843648
03083 Polycomb repressive complex
100843648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bdi03036
]
100843648
Enzymes [BR:
bdi01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100843648
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
100843648
HDAC complexes
Sin3A-HDAC complex
100843648
BRAF-HDAC complex
100843648
REST complex
100843648
SHIP complex
100843648
MiDAC complex
100843648
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
100843648
Heterochromatin formation proteins
Other heterochromatin formation proteins
100843648
Chromatin remodeling factors
NuRD complex
100843648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
100843648
NCBI-ProteinID:
XP_003566818
LinkDB
All DBs
Position
2:complement(42331446..42333390)
Genome browser
AA seq
553 aa
AA seq
DB search
MKSLSETNKAAKVCPTRIPHHIRLELLLLLYVRAGVRARYATHSLNCAQTRPGTDNPNRA
APAMETEGNSLPSPSCPDGRTRSVCYYYDPLIANVDYGAGHNMVPRRVALTHALVDSYGL
LHGHGMKRLRTRPATEEELASILNKDYLELLRDLTPHNYSGKRREGAVKRNIVGLTHHDQ
EAEDDGQQNSDDNPVIAGLWDYCQRYAGGSLAAARALGSRDSDIAINWSGGMHHACRDGA
SGFCYANDIVLAVRELLRVFPRVLYVDIDVHHGDAVEDQFAEDSRVMAVSFHQHGRRANG
GDGEFFPGTGAAGDVGKGEGEYRTPNVPLKYGMDDAGYREMFRPIVGEVMRVFQPEALVM
QCGADSLAGDRLGEFNLSVRGHASCVAYLRSFNKPLLLLGGGGYTINHVASCWCYETAVA
IGTEIPDEIPHHGYEHYNKDQDYKLHYAATRPVKNASNTKEHMANIRKEAMENLEKLKSL
QLEAAPSVQFKDPTVGSINFPNLYDCRKRDREYSEVDDPIKRLYRLCGKADLGDFFTEVG
REHIKSNAVTRQR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgaagtccctctccgagacgaacaaggccgcgaaagtctgtccgactaggattccacat
cacatccggctcgaactgctcctccttttatatgtacgcgccggagtacgtgcgagatat
gctacgcattccctgaattgtgcgcagaccagaccagggaccgataatcccaatcgcgcg
gcgccggcgatggagacggaagggaactcgctgccttcgccgtcgtgccccgacgggcgg
acgcgcagcgtgtgctactactacgaccccttgatcgccaacgtggactacggcgcgggc
cacaacatggtgccccggcgcgtggccctcacgcacgccctcgtcgactcctacggcctc
ctccacggccacgggatgaagcgcctccgcacgaggcccgccaccgaggaagagctcgcc
tccatcctcaacaaggactacctcgagctcctccgcgacctcaccccacacaactactcg
ggcaaacgccgagaaggcgcggtcaagcgcaacatcgtcgggctgacccaccacgaccaa
gaagccgaagacgacggccagcagaacagcgacgacaaccccgtcatcgcggggctctgg
gactactgccagcgctacgccggcgggtccctcgcggccgcgcgcgcgctggggagccgg
gactcggacatcgccatcaactggtccggcgggatgcaccacgcgtgcagggacggggcc
tcgggcttctgctacgccaacgacatcgtgctggccgtccgcgagctcctgcgcgtgttc
ccgcgggtgctgtacgtggacatcgacgtgcaccacggcgacgccgtcgaggaccagttc
gcggaggattcccgcgtcatggccgtatcgttccaccagcacggccgcagggccaacggc
ggggacggcgagttcttcccgggcaccggggccgcgggagacgtggggaagggggaagga
gagtaccgcaccccgaacgtgccgctcaagtacggcatggacgacgccgggtaccgcgag
atgttcaggcccatcgtgggggaggtgatgagggtgttccagccggaggccctcgtgatg
cagtgcggcgccgactcgctggcgggcgaccggctcggcgagttcaacctctccgtcagg
ggccacgcctcctgcgtcgcctacctccggagcttcaacaagccgctgctcctcctcggc
ggcggcggctacaccatcaaccacgtcgcctcatgctggtgctacgagacggcagtcgcc
attggcaccgagatccccgacgagataccgcatcacggctacgagcactacaacaaggac
caggactacaagctccattacgccgccaccaggccggtgaagaacgccagcaacaccaag
gagcacatggccaacataaggaaggaagctatggagaacctggagaaacttaaaagcctg
caactcgaggccgcgccgagcgtgcagttcaaggatccaaccgtgggcagcatcaacttc
ccaaacctctacgactgtcggaagagggacagggaatactcggaagtggacgatcccatc
aagaggctgtaccggctgtgcggcaaggctgaccttggcgacttcttcactgaagtgggg
agagagcatataaaaagcaatgccgtcactcgtcaaagatga
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integrated database retrieval system
