Brachypodium distachyon (stiff brome): 100843825
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Entry
100843825 CDS
T01717
Name
(RefSeq) THO complex subunit 4B isoform X2
KO
K12881
THO complex subunit 4
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03013
Nucleocytoplasmic transport
bdi03015
mRNA surveillance pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100843825
09122 Translation
03013 Nucleocytoplasmic transport
100843825
03015 mRNA surveillance pathway
100843825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100843825
03041 Spliceosome [BR:
bdi03041
]
100843825
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100843825
TREX complex
100843825
Spliceosome [BR:
bdi03041
]
Complex C
Other components
EJC/TREX
100843825
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100843825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
100843825
NCBI-ProteinID:
XP_010238843
UniProt:
I1IVC3
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All DBs
Position
4:complement(48431874..48434200)
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AA seq
285 aa
AA seq
DB search
MADSLDMSLDDLISKNKSSSSQSQSRRGRRNQASPSATGGPAPTGRRFHARAATAPYHQL
AFHHNQVPPAYAYAAAQAQAMPMLAPPPPSGVETGTKLYISNLDYNVSNEDIKELFSEVG
DLKRYSINYDKSGRSKGTAEVVFARRSDALAALKRYNNVQLDGKPMQIEVIGTNIEAPAP
AIFTINTPALGIGSFDFPSKSVLGRGGGRGWPRGGGEGGRGWPRGESEGGRGWPRGGGGF
GGRGRGGRGAVGRGQGRGGRGSQPVSADDLDADLDKYHSEAMQIS
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atggcggactccctggacatgtccctcgacgacctcatctccaagaacaagtcgtcctcc
tcccagtcccagagccgccgtggccgccgcaaccaagcctcgccgtcggcaacaggcgga
cccgcacccacgggccgccgcttccatgcccgcgccgccaccgcgccctaccaccaactc
gccttccaccacaaccaggtgccaccggcttatgcgtatgctgcggcccaggcccaagcg
atgcccatgctggcgccgccgccgccctccggcgtggaaacgggcaccaagctctacatc
tccaacctcgactacaacgtctccaacgaggacatcaaggaactattttctgaggtgggc
gatctcaagcgttactccattaactatgacaagagtggaagatcaaagggaactgcagaa
gttgtatttgcaagaagatccgatgctctagctgctcttaagaggtacaacaatgtgcag
cttgacggtaaacctatgcaaatcgaggtcattggaacaaacattgaggcacccgctcct
gctattttcactataaatacaccagcacttggaattggaagcttcgattttccttccaaa
agtgtgcttggaaggggtggtggtcgaggatggcctcggggtggaggtgagggtggtcga
ggatggcctcggggcgaaagtgagggtggtcgagggtggcctcgcggcggaggtggattc
ggcgggcgtggtcgaggggggcgtggagctgttggacgtgggcaaggtagaggagggcgt
ggcagtcagccagtttctgcggatgatctggacgccgacttggacaagtaccactctgaa
gcgatgcagatcagttaa
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