Brachypodium distachyon (stiff brome): 100844143
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Entry
100844143 CDS
T01717
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100844143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100844143
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100844143
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100844143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
100844143
NCBI-ProteinID:
XP_003580804
UniProt:
I1J397
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All DBs
Position
5:27210715..27220051
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AA seq
622 aa
AA seq
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MSGLLNSNLNSSTSNLPDSTGRPFTGSFSGHSGSVQGFHHSGLHNIHGNFSLPNMPGSLP
QRNAAMSGLPSSGVQQPGGSISGRFASNNLPVAMSQIPHAHSGVSGRAMNVGGGQAFSSG
MNIGGTIQGLSSNLGSSGNRNSVPGMSVSPALGNLGPRITSSVGNIVGGSNMGRNISSGG
LSAPSIASRINFSGNAGSGSLNVQGSNRMMNGLLPQGSSQLINMIGSSYPTSGGTLSQNQ
MQPGNHSLGSMGMLHDTGDNAPFDINDFPQLTGRPSSAGGPQGQYGSLRKQGVGVNTIVQ
QNQEFSIQNEDFPALPGFKGGSSDYGMELHHKEQLHENVPVMPAQQYPMSRSVGFNLGSA
YPPNRQQHQQGANSVQNAGPQNIGLRPLNSVGQTSSLGSYEQLLQQYQQPQAQSPFRLQQ
MSSAPQSFRDPSLKIIQGGQIPPDPYGLLGLLGVIRMNDADLASLALGMDLTSLGLDLNS
QDNLYKTFGSPWSNEPAKGDPDFHNPACYLAEQPPPLQPINFKRFHIATLFYIFYSMPKD
EAQIYAANELYNRGWFYYKEPRLWLIRIANMEPLVKTASYERGSYMCFDLNSWDAVRKDN
FVLHYELVEKRPALPSSYQTVR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcttgctgaattcaaatcttaacagttccacatcgaatctcccagactcaacc
ggacgaccatttacaggatccttttctggccattctggatcagttcaaggtttccatcac
tctggtctgcacaacattcatggaaatttcagtcttccaaatatgcctggatcactacca
caaaggaatgctgcaatgagtggccttccgtcctccggggttcaacaacctggggggagc
atttcagggagatttgcttctaacaaccttccagttgccatgtctcagattcctcatgcg
cattcaggtgtcagtggtagagcaatgaatgttggtggaggtcaagcatttagtagtgga
atgaatattggtggtaccattcaagggttatcctcgaacttgggcagcagtggaaatcgg
aattccgttcctggcatgtcagtatctccagctttaggaaacttgggtcctcgtatcaca
agttccgtgggaaacattgtgggcggaagtaatatgggaagaaatataagctctggtgga
ttgtcagcgccgagtattgcgtcacgtatcaattttagtggcaatgctggaagtggaagt
cttaatgtccaaggatccaacaggatgatgaatggccttcttccgcaaggatcatctcaa
ttgattaatatgattggaagttcatatccaacatctggaggtacattatcccagaaccaa
atgcaaccaggaaatcattctctaggttctatgggcatgctacatgataccggtgacaat
gctccatttgacatcaatgatttcccccaattgactggtcgacctagttctgctggtggt
ccacaaggacaatatggatcgctacggaagcaaggagttggtgttaacaccattgtccaa
caaaaccaggaattcagcattcaaaatgaagatttcccggctttgccaggatttaaaggt
ggcagttcagattatggtatggaattacatcacaaggaacaacttcacgagaatgtacct
gtaatgccagcacaacaatatcctatgtcaaggtcagttggttttaatctaggaagtgcc
tacccaccaaatcgtcagcaacatcagcagggtgctaattcagttcagaatgccgggccc
caaaatattgggctaagaccgctaaactctgtcggtcaaacttctagtttgggatcatat
gagcaactgctgcagcaataccagcagcctcaggctcaaagtcctttcaggttgcagcag
atgtcttcagccccacagtcatttagggatccgagtctgaagatcattcaggggggccaa
ataccacctgatccatatgggctactaggattgctgggagttatcaggatgaatgatgct
gacttggcatctcttgctttaggaatggatttgacatcattgggattagatctcaactca
caagacaatctgtacaagacatttggctctccatggtcaaatgaaccagcaaaaggagat
cctgattttcataatccagcttgttacttagctgagcaacctccgccactacagcccata
aattttaagaggtttcatatagcaacactgttttacatattctatagcatgccgaaggat
gaagctcagatatatgctgccaacgaactatataaccgaggatggttttactataaagaa
ccgcggctatggctcataagaattgctaacatggagcctcttgtcaaaactgctagttat
gaacggggttcgtatatgtgctttgatctgaacagctgggatgcagtccgtaaggataac
tttgttctccattatgagcttgtagagaaaagaccagctctaccttcttcataccaaact
gttaggtga
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