Brachypodium distachyon (stiff brome): 100844532
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Entry
100844532 CDS
T01717
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bdi04121
]
100844532
Enzymes [BR:
bdi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100844532
Ubiquitin system [BR:
bdi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100844532
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
PA
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-rbx1
zf-RING_5
zf-C3HC4_3
Prok-RING_4
zf-ANAPC11
zf-RING_4
AF_0924
Motif
Other DBs
NCBI-GeneID:
100844532
NCBI-ProteinID:
XP_010240671
LinkDB
All DBs
Position
5:28404989..28410008
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AA seq
522 aa
AA seq
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METNNFKSRRGAMLFPLCLAAMICFMAQIGAANVVLMGNNLTLSFDDIEANFAPGVKGSG
VDGVVYTAEPLNACSALTNKAVKGPPSPFALVIRGGCTFDEKVKNVQDAGFKAAIVYDNE
NSGVLVSRIVTVAGSSSGIHIYAVFISKVSGEVLKKFSGRTDVEVWLIPTFENSAGSIMA
ISFISLLAMSAVLATCFFVRRHRIRRDRPRIPEAREFHGMSSQLVKALPSLIFTKVQEDN
CTSSLCAICLEDYNVGEKLRVLPCRHKFHAACVDMWLTSWRSFCPVCKRDADAGTSAPPA
SETTPLLSSAVQLPSPSSSFRSSVAASPPRPISRRPSSQSISRVYSVSGTPNSPSIQRYY
RTSSAMSISRSGADLANMSSPLLRGSHLGSTHSLVGSHLSPPINISYAPPHMYHSAHASP
STHVSSSYIFNSGHSSSGYYLGSSTQHRSYLRRCGESGPSLSTMAPQSPQQQSQLHHGGE
SETNLAGASSAQSFRQSYLRHCGDSDASLSAMASSGQSLPGC
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggagactaataatttcaagagtagacgaggagcaatgttatttcctctctgtctcgct
gcaatgatttgcttcatggctcagataggagctgccaatgttgttctaatggggaataat
cttactttgtcattcgacgatattgaagcaaactttgctccaggagtgaaaggatctggt
gttgatggtgtagtttatactgctgaaccgttgaatgcttgtagtgcactaacaaacaag
gcagtcaagggtccaccatctccattcgcattggttattagaggtggctgcacatttgac
gagaaagtgaagaatgtgcaggatgctggattcaaagctgcaatcgtatatgacaacgag
aatagtggggttctggtttcaagaattgtaacagtggctggaagctcaagcggtatccac
atatatgccgtgttcatctctaaggtctcaggggaggttttgaagaaattttcaggccgt
acagatgtagaggtgtggttaatacccacatttgagaactcagccgggtcgatcatggca
atttcattcatatcactgcttgccatgtctgctgttctagctacttgtttctttgtgaga
agacatcgaataaggcgggaccggcctagaattccagaagcccgagaattccatggaatg
agcagccaattagttaaggcactgccgagccttattttcacaaaggtgcaagaggacaac
tgcacatcatcattgtgtgccatttgcttggaagactacaatgttggagaaaaactaagg
gtgctgccttgccgccacaagttccatgcggcttgtgtggacatgtggctcacatcttgg
agatcattctgtcctgtatgcaagcgagatgcagatgctggaacgtcagcccctcctgcc
tcggagactaccccgttgctttcttctgcggttcagttaccctctccatcatcttcattc
cgatcaagtgttgcagcatcccctcccagaccaattagccgacgcccttcatcgcaatct
atatctcgtgtctactctgtttctggtacccccaactctcctagcatccaaagatactac
agaacttcatctgccatgagtataagcagaagcggtgcagaccttgcaaatatgtcttct
cccctcctccgcggctcgcaccttggttccacacactctctagttggcagccacttgtct
ccaccaatcaacataagttatgcaccaccacacatgtaccattccgcccatgcatcaccc
agtacgcatgtcagttcgtcctatatcttcaattctgggcacagttcttcaggctactat
cttggttcgtccacccaacatcggtcgtacctaaggcgctgcggggagtcggggcctagc
ctatctaccatggcccctcaatcaccacagcaacagtctcagctgcaccatggtggcgag
tcagagacaaacctagcaggcgcatcgtcagctcagtcctttcggcagtcctacctgaga
cactgtggtgattcggatgcgagcttgtctgccatggcatcgtcaggccagtcgttgccg
ggatgttga
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