Brachypodium distachyon (stiff brome): 100844693
Help
Entry
100844693 CDS
T01717
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100844693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100844693
03036 Chromosome and associated proteins [BR:
bdi03036
]
100844693
Enzymes [BR:
bdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100844693
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100844693
mRNA degradation factors
5'-3' decay
Decapping complex
100844693
Chromosome and associated proteins [BR:
bdi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100844693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
EPL1
Rtt102p
Motif
Other DBs
NCBI-GeneID:
100844693
NCBI-ProteinID:
XP_010234885
UniProt:
I1I573
LinkDB
All DBs
Position
3:complement(32045973..32051276)
Genome browser
AA seq
523 aa
AA seq
DB search
MHHPRARYPPGYDYGGGGGGGGRGGGGGGERGGGSGGNQNYYGRNPQPQHHDYHQPQHAQ
RNSFSHQQQHQQHQHAQKNSFSQQQHQQQQQQWLRRDQAAAQASGEAAARTAARLDAVDT
SSQDWKAQLNIPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESI
PIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKEL
GKYLNIEVMVSTGGTSLKDDIMRLYQPVHLLAGTPGRILDLTRKGICMLNECSMLIMDEA
DKLLAPEFQPSVEQLISFLPASRQLLLFSATFPVTVKDFKQKYLPRPYVINLMDELTLKG
ITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM
LQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRVGRSGRF
GHLGLAVNLITYEDRFNMYRIEQELGTEIKTIPPQIDLAEYCQ
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaccccagagcccgctacccgcccggctacgactatggcggcggcggcggaggc
ggcggccgtggcggtggcggcggcggcgaacgaggaggcggcagtggcggaaatcagaac
tactacggcaggaacccgcagccgcagcaccacgactaccaccagccgcagcacgcgcag
aggaactcgttctcacatcagcagcaacatcagcagcaccagcacgcgcagaagaactcg
ttctcgcagcaacagcatcaacagcagcagcagcagtggctgcggcgggaccaggccgcg
gcacaggcctctggggaggctgcggcgaggacagcggcgcggctcgacgccgttgacacg
agctctcaagattggaaggcacaattgaatattccagctccagacacacgttatagaaca
gaggatgttactgcaaccaaaggcaatgagtttgaagattattttctgaaacgtgagcta
ctcatgggaatatatgagaagggatttgaaaggccatctcctattcaagaagaaagcatt
ccaattgctctaactggaagtgatattcttgcaagagcaaaaaacggcactgggaagact
gctgcattctgcattccagcacttgaaaaaattgatccagagaaaaatgccatacaagtt
gttatattggtaccaacaagagaactagctttgcagacttcacaagtgtgcaaagagctc
gggaagtacctgaacattgaagttatggttagtactggaggaaccagcttgaaggatgac
attatgcgtttgtaccaacctgttcatttacttgctgggacacctggccggatactggat
ctcaccaggaagggcatttgcatgctgaatgagtgttcaatgctcattatggatgaggca
gacaagctattagcacccgagtttcaaccttctgtggagcaactcattagcttccttcca
gctagtcggcaactattgctgttttctgcaacctttcctgtaactgtcaaggatttcaag
cagaaatacctgcctagaccttatgttattaatcttatggatgaactaacactgaaagga
ataacccaatactatgcttttgtggaagaaaggcagaaagttcattgtctgaatacactt
ttctcaaagcttcaaataaatcagtctattattttctgcaactctgtcaatagagttgag
ctgctggcaaagaagatcaccgagcttgggtattcttgcttctacattcatgctaaaatg
ttgcaagaccatcgaaacagagtgttccacgattttcgcaatggtgcttgcagaaacctt
gtgtgcacagatctttttaccagaggaattgacatccaagctgttaatgttgtcattaat
tttgacttccccaagactgctgaaacatatttgcatagggttggtcgttctggaagattc
ggacaccttggtttggcagtgaacttaatcacttatgaggaccgtttcaacatgtatagg
attgagcaagaacttgggacagaaataaaaacaatacctccacagattgacctggcggaa
tactgccagtga
DBGET
integrated database retrieval system
