Brachypodium distachyon (stiff brome): 100844813
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Entry
100844813 CDS
T01717
Name
(RefSeq) pre-mRNA-splicing factor 38 isoform X2
KO
K12849
pre-mRNA-splicing factor 38A
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100844813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100844813
Spliceosome [BR:
bdi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100844813
Complex C
U4/U6.U5 tri-SnRNP related factors
100844813
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GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
100844813
NCBI-ProteinID:
XP_003576714
UniProt:
A0A0Q3IKU8
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Position
4:7172903..7178502
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AA seq
391 aa
AA seq
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MANRTDPLARSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGT
HGGNRRPTPFLCLTLKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTGTIADVYQYL
EPLYNDYRKIRQKLNDGKFMLTHVDEFIDELLTKDYCCDTALPRIQKRWVLEASGTLEPR
RSALEDDFEEEEEDKEDGQPMDVDEPSGREKDHYRARSPTKERDRDRKHERHHRERDHDR
DRDYDRDYGRGRERDRDRDRGRERDRERDRGDRDRHRIRDDDYNRDRDRERDRDGRERER
RDRDRGRHRSRSRSRSRDRRERDREDGEHRRRRGRGSASPRGRAEDDGRREEPKKRKEKK
DKGAGNGVDSNDPEIIEMNKLRASLGMKPLK
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgcacggaccccctggcccggagcatccacggcaccaacccccagaacctg
gtggagaagatcgtgcggtccaagatctaccagagcacctactggaaggagcagtgcttc
ggcctcacggcggagaccctcgtcgacaaggccatggagctcgaccacactggcggcacc
cacggcggcaaccgcaggcccacccccttcttatgcctcaccctcaagatgctccaaatc
cagccggacaaggacatcgtcgtcgagttcatcaagaacgaggactacaagtatgttcgg
gttcttggggcgttctacctgcgcctcaccggcaccatcgccgacgtataccagtatctc
gagccgctctacaatgactaccgcaagattaggcaaaaactgaacgatggaaagttcatg
ctgacgcacgttgatgagttcatcgatgaactcctgaccaaggactactgctgcgacact
gccctcccccgcatccagaagagatgggtccttgaagcttctggaactctggaaccaaga
agaagtgcacttgaagatgattttgaggaagaggaggaagacaaggaggatggacagcct
atggatgtagatgagcctagtggtcgtgaaaaggaccattatcgtgcaaggagccctacc
aaagaacgtgacagggacaggaaacatgaaagacatcacagggaacgagatcatgacaga
gatcgggattatgatagggactatgggaggggccgggaaagagaccgagatagagataga
ggccgtgaaagagatagagagagggataggggggatcgagaccgccaccgcatccgtgat
gacgactacaaccgagatagagaccgagaaagagatagggatggcagggaaagagaacgc
cgggacagagaccgtggcaggcacaggagccgttcaaggagcaggagcagggatcggcga
gaaagagaccgtgaagatggagagcaccgcaggagacgtggccgtggtagcgccagtcct
cgagggcgtgctgaggatgatggtcggagggaggaacctaagaagagaaaggaaaagaaa
gataagggcgcaggaaatggtgtggattcaaatgatccagaaattattgagatgaacaag
ctccgcgcgtcgctagggatgaaacctctgaagtag
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