KEGG   Brachypodium distachyon (stiff brome): 100844841
Entry
100844841         CDS       T01717                                 
Name
(RefSeq) UBP1-associated protein 2B
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100844841
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100844841
   03041 Spliceosome [BR:bdi03041]
    100844841
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     100844841
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100844841
Spliceosome [BR:bdi03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    100844841
SSDB
Motif
Pfam: RRM_1 RRM_7 SNAPC2
Other DBs
NCBI-GeneID: 100844841
NCBI-ProteinID: XP_010240494
UniProt: I1J2D0
LinkDB
Position
5:complement(25455478..25463732)
AA seq 510 aa
MAPKRKADPAESAADPAVAKHLKELSSSELKPRGTIYFPINDDTPEPTAEAAAEEEDGAD
GDDEEDITKLLEPLSREQLVALLRVAAETSPATMAAVRRAAETDPASRKLFVHGLGWGAG
AEDLRSAFSRFGDLEDCRVISDKQSGKSKGYGFVLFRSRTAALRALRRPQLQIGGRIAFC
HLAASGPAPPSSQSQSQNPSSNNNANSNPGATNTAPATSSSQPDNMPRKIFVGNVHADVD
VDRLYEYFSQFGEIEEGPLGFDKSTGKPKGFALFVYKSVESARRALEEPMRNFDGKMLNI
QKAIDGRTKGTPGMNTSAANPNATTASAQMAVPSIAAITPYDTSAYGATAVHDMGFAQQA
AMMGMGAQQQAFAQPNTAMLAMMAAAIQNPAMLASLNPAFAAAALGAGGQHTAGIPGFGA
QGFGTQGFAAGGVNFPNAAGIQGAAAYQGAPGFQGAPGFQTSAGFQVGQAASQTGTTAAA
AAGAGYQAGAAGQGQVPSSQIGGTGFQGGY
NT seq 1533 nt   +upstreamnt  +downstreamnt
atggcgccgaagcggaaggcagatccggccgagtccgccgccgatcctgccgtcgccaag
cacctgaaggagctctcatcctccgagctcaagccccgcggcaccatctacttccccatc
aacgacgacaccccggagcccaccgctgaggccgccgccgaggaggaggacggcgccgac
ggggatgacgaggaggacatcaccaagctgctcgagccgctgtcgagggagcagctcgtg
gcgctgctccgcgtggccgccgagacgagccccgcgaccatggcggccgtgcggcgcgcg
gcggagacggaccccgcgagtaggaagctcttcgtgcacggcctcggctggggcgccggc
gccgaggacctccgctccgcgttctcccgcttcggcgacctagaggactgccgcgtcata
tcagataagcaatctggtaaatccaagggctacggcttcgtcctattccgttcccgcacc
gcagcacttcgcgccctccgccgcccccagctccagatcggcggccgtattgccttttgc
cacctcgctgcctctggtcctgcgcccccatcctcccagtcccagtcccagaaccctagc
tccaacaacaacgccaactccaaccccggtgctaccaataccgctcctgctacatcgtcc
tcgcaacccgacaacatgccgcgcaaaatctttgttggtaacgtgcacgctgatgttgat
gttgaccgcctctacgagtacttttcgcagtttggtgagattgaggaggggccattaggt
tttgacaagagcactggtaaacctaaggggtttgcgctgtttgtttacaagtctgtggag
agtgcccggcgtgccctggaggagcccatgaggaattttgatggcaagatgctcaatatt
cagaaggctatagatgggaggacgaagggcacacctgggatgaacaccagtgctgctaac
cctaatgccaccacggcttctgcacagatggccgtaccttctattgctgccattactcca
tatgatacatcagcatatggtgctactgctgttcatgacatggggttcgctcagcaagct
gccatgatgggaatgggtgcgcagcaacaggcgtttgcgcagccaaatactgcaatgctc
gccatgatggcagcagcgatccagaacccagctatgctcgcatcactaaatccagctttt
gctgctgccgcgttgggcgctgggggccaacacacagctggcattcctggttttggagct
caaggttttgggacacaggggtttgcagctggtggtgtcaattttccaaatgcagcaggt
attcagggagctgcagcatatcaaggagctcctggttttcagggggcacctgggttccag
acttctgctgggtttcaggttggccaagcagcttcccagacaggtactactgcagcagcc
gctgctggtgctggttatcaggctggagctgctgggcagggtcaagtgccaagttcccag
attggtggtactggtttccagggtggctattga

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