Brachypodium distachyon (stiff brome): 100845007
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Entry
100845007 CDS
T01717
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03440
Homologous recombination
bdi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100845007
03450 Non-homologous end-joining
100845007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bdi03032
]
100845007
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100845007
DNA replication proteins [BR:
bdi03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
100845007
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
100845007
BRCA1-C complex
100845007
NHEJ (non-homologous end-joining)
MRX complex
100845007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SMC_N
AAA_21
SbcC_Walker_B
AAA_13
Rad50_zn_hook
AAA_29
ABC_tran
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
100845007
NCBI-ProteinID:
XP_003574988
UniProt:
A0A0Q3JMF3
LinkDB
All DBs
Position
3:complement(45110220..45129077)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFGPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKRLHKDQAQEIKTFRLKLENLQTLKDQAYRLRDSIAQDQEKSDALKT
QMEDSKTNIQAVENKILRTETSIDELRRLQEQISTKTSARSTYVTLREKQYAALSEENED
TDEELEEWRTKFEERIALQGTKISKLERDMNDEKAKSSLLSKTINDSTLHIGKLQAEADA
HISMKHERDSAIRKIFTKHNLGPIPDPPFTNDVAMNLTNRTRARLSNLEDDLQDKKKSNE
TQLEFLWGRYLKVNARYSEVDGQIQSKKESKLGILRRMKDKENERDAAEKELSKLNLARI
DERERYLQIEVERKTVALAERDYDKIISQKRTEIYTMDHKIKALHREKDNIASDADDRVK
LELKKYELEKCKSKLHKIYDEHNDKIRNVLKGRRPPEKDVKKEITQAFGCIDAEYNGLNS
KSQEAEQQLKLVQMKIEGARSHLSKLQKDLDAKRRHLNSKLQSITKVSVDINTFPKVLEG
AMEARDKLNSEKIVANGLQKMYDPFEKMAREQHKCPCCDRGFTPDEEDLFVKKQRTFGSS
NADLMKALEMELSNAEDFFQQLDNLRVIYDQYVKLGKETITSAEKDLKQLLADESEKAQT
FEDLVSVLAQVKMDRDGVEILLHPSDAIDRHVQEIQELEPEVEDLEYKLDSRGQGVKSKE
DIQLELNSAMRTRDTLLSEMDDLRDQHKMLSEDFTNAQMRWHAVREEKLSASSILHTFKK
AEEDLVLFAEEKEQLTLDQKHLEEALVPLRKESESLLQEHKALKERLDQEYDHLAERRRG
FQQEIDALGTLNTRIKEYVDSKKAERLHELQERHTLSLSQLQECEAKKQEISDELDRSKE
KLRSQDQFKRNIDDNLNYRKTKAEVDRLTHDIELLEDNVLSFGSMSTIEADLKRNAQEKE
RLLSEYNRCQGTLSVYQSNISKHKVELKQTQYKDIEKRYFNQLLQLKTTEMANKDLDRYY
AALDKALMRFHTMKMEEINKIIKELWQQTYRGQDIDCISINSDSEGAGTRSYSYRVVMQN
GGAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMESRKGQENFQLIIITHDERFAQLIGQRQLAEKYYRVSKDEQQHSKIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgtggacaagatgctgatcaaggggatccggagcttcggcccggagaacaag
aacgtcatcaccttcttcaagcccctcaccctcatcgtcggccccaacggcgccggcaaa
accacgatcatcgaatgcctgaagctgtcctgcaccggcgagttgccccctaactcccgc
tccggccacaccttcgtccacgaccccaaggtagcaggtgagaccgagacgaaagggcag
attaagctgcggtttaagacagcagcaggaaaggatgtggtgtgcatccgctctttccag
cttacccaaaaggcatcaaagatggagtttaaggcaatcgagagcgtcctccagactata
aatccacacacgggcgagaaggtctgtctcagctacagatgcgctgatatggatagggag
attccagccctaatgggtgtttcaaaggctatactggagaatgttatatttgtgcaccaa
gatgagtccaattggccattacaggacccatcaacacttaagaagaagttcgacgacatc
ttttctgctacccggtacaccaaagctctcgaagtcataaagagacttcacaaggaccaa
gcacaagaaatcaagacttttaggttaaagctggagaaccttcagacccttaaagaccaa
gcatacaggcttcgtgacagtattgcacaagatcaagagaagtcagatgccttaaaaact
caaatggaggattcgaaaacaaacatccaagctgtcgaaaacaagatccttcgtacagaa
acaagtattgatgaactgaggagacttcaggagcaaattagcaccaaaacatctgctaga
agtacatatgttacacttcgggagaaacagtatgctgctctttctgaggaaaatgaagat
actgatgaggaactggaggagtggcgaactaaatttgaagaaagaattgcattacagggg
acaaaaatcagtaaactagaacgagatatgaatgatgaaaaggcaaaaagctccttgctg
tccaagaccatcaatgattcgacacttcacataggaaagctccaggcagaagctgatgct
cacatttccatgaagcatgaaagggacagtgccatccgaaagatattcaccaaacataat
cttgggccaattcctgatcctccttttactaatgatgttgccatgaaccttacaaacaga
actagagcaagactatcaaatctcgaggatgatttgcaggacaagaagaaatctaacgag
acacagcttgaatttctttgggggcgttatctgaaagtaaatgctcgttactctgaagtt
gatggccagatacaatccaagaaagaatctaagttaggtattttaaggcgcatgaaagat
aaagagaatgaacgtgatgctgcagagaaggagctttcaaagcttaatctggcccgcatt
gatgaaagggagcgatatctgcaaattgaagttgagaggaagacagttgccctggcagaa
agggactatgataaaattatatctcagaagcgcacagagatatacaccatggatcataag
ataaaagcacttcaccgggagaaagataacatagctagtgatgctgatgacagagtaaaa
ctagaactaaagaagtatgagttggaaaagtgcaagagtaaacttcataaaatatatgat
gagcataatgacaaaattagaaatgttctgaaggggaggcgtccccctgagaaggatgtc
aagaaggaaattactcaagcttttgggtgcatagacgcagaatacaatggtttgaattca
aaatctcaggaagcggaacaacagttgaaattggtacagatgaaaattgagggtgccaga
agccacttgtcgaagcttcaaaaagatttggatgcaaaaagaaggcatctgaactcgaaa
cttcaatccattactaaggtttctgttgacatcaacacattccccaaggttctggaaggc
gccatggaagctagagataaactgaatagtgagaaaattgtcgcaaatggactgcaaaaa
atgtatgacccatttgaaaaaatggcccgtgagcagcacaagtgcccttgctgtgatcgt
ggtttcacacctgacgaagaggacctgtttgtaaagaagcaaaggacatttggttcaagt
aatgcagacctcatgaaagcgctggaaatggaattatcaaatgctgaagactttttccag
caattggataatctccgtgtgatttatgatcaatatgtgaagctggggaaagagactata
acttcagcagagaaggacttgaaacaacttttggcggatgaaagtgagaaggcgcaaaca
tttgaagatcttgtgagtgttcttgcccaagttaaaatggacagggatggagtggaaatc
ctgctacatccaagtgatgctatcgacaggcatgtgcaagaaatacaggagttagaacca
gaagttgaagatctcgaatataagcttgattctcgtggtcaaggcgttaaatctaaggag
gacattcagttggagctgaactctgcgatgagaacgagggatacattgcttagtgaaatg
gatgatctcagggatcagcacaaaatgcttagtgaggattttacaaatgctcagatgcga
tggcatgctgtcagggaagaaaaactaagtgcttcaagcatattgcatacgttcaaaaag
gctgaagaagatttggtactatttgctgaggaaaaggagcaactgactctagatcagaag
catttagaagaggctcttgttccattgagaaaagagagtgaaagcttgttgcaagagcat
aaagctttgaaggaaaggcttgatcaggagtatgatcatctggcagaaaggagaagggga
ttccagcaagaaatcgatgcactaggaacccttaacacacgcatcaaagagtatgtggat
tcaaagaaagcagagaggcttcatgaattgcaggaaagacataccctatcgctgtctcag
ttacaggaatgtgaagcaaaaaagcaagaaatatcggatgagctagacaggagcaaagaa
aaattgcggagccaggatcagtttaaaagaaacattgatgacaacctgaactacaggaaa
acaaaagctgaagtggatcgactgactcatgatatagagttacttgaagataatgtgctt
tcctttggcagcatgtctactatagaagctgatcttaaacgtaatgctcaggaaaaagag
aggcttctctcagagtataataggtgtcaaggaacactttctgtttatcaaagtaatatt
tcaaagcacaaagttgagcttaaacagacacaatacaaggatatcgagaagcgatatttt
aatcaacttctccaacttaagacaactgagatggcaaataaggacttggaccgttactat
gctgctttggacaaggctcttatgcggttccataccatgaaaatggaggagatcaataaa
ataataaaggaattgtggcagcagacatacagaggccaagatattgattgcataagcatc
aattctgattctgagggtgctggcactcgatcatatagctatcgtgttgttatgcaaaat
ggtggtgctgagctggaaatgcgaggccgatgcagtgctggtcagaaggtgcttgcttct
cttataatcagactggctctggcagagacattttgtctaaattgcggcatattagctctg
gatgagccaaccactaatctagatggaccgaatgcagagagcctagctgctgccctgttg
agaataatggagagcaggaaaggccaagagaatttccagctgattataatcacccatgat
gagagattcgctcagcttattggtcagaggcagcttgccgagaagtactatcgagtctcc
aaggatgaacaacaacacagcaaaatcgaagcccaagagatatttgactga
DBGET
integrated database retrieval system
