Brachypodium distachyon (stiff brome): 100845662
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Entry
100845662 CDS
T01717
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03030
DNA replication
bdi03420
Nucleotide excision repair
bdi03430
Mismatch repair
bdi03440
Homologous recombination
bdi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100845662
03420 Nucleotide excision repair
100845662
03430 Mismatch repair
100845662
03440 Homologous recombination
100845662
03460 Fanconi anemia pathway
100845662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bdi03000
]
100845662
03032 DNA replication proteins [BR:
bdi03032
]
100845662
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100845662
Transcription factors [BR:
bdi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100845662
DNA replication proteins [BR:
bdi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100845662
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100845662
MMR (mismatch excision repair)
100845662
DSBR (double strand breaks repair)
HR (homologous recombination)
100845662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
100845662
NCBI-ProteinID:
XP_003561889
UniProt:
I1H840
LinkDB
All DBs
Position
1:complement(68671152..68674722)
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AA seq
635 aa
AA seq
DB search
MAAKSVTPDALAIILANRSPESPEDVPEIVVQVVDLKPLGSTGTRFTFMASDGKAKMKAM
LPTNFASEVNSGNLQNLGLVRILHYTCNDIPKTLSKCLIITKCEVVAQALDAEINSEVKS
EEEPVVLAKPKEEPVVLTKRTEEAEIMPSQTGGGPSATVQKRQHVKSASQIISEERGNAA
PAARLAITRRVHPLISLNPYQGNWVIKVRVTSKGNLRTYRNARGEGHVFNVELTDEDGTQ
IQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVQNDYEMTLNENAVVEEAEGE
SFIPPVQYNFVKIDHLGPYVGGRELVDIIGVVQSVSPTLSIRRKIDNETIPKRDIVVADD
SNKTVTVTLWNDLATTIGEQLLDMVDSAPVIAVKSLKVSDFQGVSVSTVGKSTLVINPEL
PEADKLRTWYESEGKGTSMASVGADMGASRTGGSRSMYSDRVFLSHITSDPNLGQDKPVF
FSLNAYISHIKPDQTMWYRACKTCNKKVTEAVGSGYWCEGCQKNYEECMLRYIMAIKVSD
PTGEAWLSLFNDQAERIVGCSADELDRSRKEEGDDSFLLRLKEATWVPHLFRVSVSQNEY
MGEKRQRITVRSESPVDYAAEARFLLEEIAKLTSS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaagtcggtgacgccggacgccctggccatcatcctggcgaacaggtcgccg
gaatcccccgaggacgtgccggagatcgtcgtgcaggtcgttgacctcaagcccctcggc
tccaccggcacccgcttcactttcatggctagcgacgggaaggcaaagatgaaggccatg
ctgcccaccaacttcgcgtcggaggtcaattccggcaacctccagaacctcggactcgtc
cgaatcctccactacacctgcaacgatatcccaaagacgctcagcaagtgcttgattatc
accaagtgcgaggtcgtggcccaggctctcgacgccgagatcaacagcgaggtcaagagc
gaagaggagcccgtcgttctcgcgaagccgaaggaggagcccgtggttctcacgaagcgg
acggaggaggccgagattatgcccagccaaactggcggaggcccatctgcgactgtacag
aagaggcagcacgtgaagtctgcgtcccagattatcagcgaggagcgcgggaatgctgct
ccagcggcgcgcttggcaattacgagaagggtgcatccattgatctccctgaatccctac
cagggtaactgggttatcaaggtgcgggtcactagcaaagggaatctgagaacttacagg
aacgcccgtggagaaggccatgtcttcaacgtagagctcactgatgaggatggcacccag
attcaggccaccatgttcaatgaggctgccaagaagttctacccgatgtttgagctgggg
aaagtctattacatctcgaaagggtcgcttagagttgccaataagcagttcaagacagtt
cagaatgactatgagatgaccctgaatgagaatgctgttgttgaagaagctgagggggaa
tctttcatcccaccggtccaatacaactttgtcaaaatcgaccatctaggcccatatgtt
ggtggcagagagctagtagatatcattggtgttgttcagagtgtatcacctactcttagc
atcagaaggaagattgacaatgagacaattccaaagcgtgacattgttgttgcagatgac
tcgaacaaaactgttaccgttactctctggaatgatcttgccaccactattggtgaacag
ctcttggacatggttgacagtgcacctgtcattgcggtaaagagtctgaaagtatctgac
tttcaaggtgtgtctgtttctactgtgggcaaaagcacacttgtgattaatccagagttg
cctgaggcggataagcttagaacttggtatgaatctgaaggcaagggtacttccatggca
tcagttggtgcagatatgggtgcttccagaactggtggctcaagatcaatgtattctgac
agagtttttctgtctcacattacaagtgaccctaatttgggtcaggacaagcctgttttc
ttcagcctgaatgcctacataagccacatcaagcctgatcagaccatgtggtaccgtgct
tgcaagacctgcaacaagaaggtgactgaagcagttggatcaggttactggtgcgaagga
tgccaaaagaactatgaagagtgcatgctgagatacatcatggctatcaaggtctctgat
cccactggtgaggcctggctttctctcttcaatgaccaagcagagcggattgttggctgc
agtgcagatgagcttgatcgcagcaggaaagaggagggtgatgacagtttccttctaagg
ctgaaagaagccacatgggttccccacctgttccgtgtcagcgtctcacagaacgagtac
atgggtgagaagaggcagaggatcactgtgaggagtgagtcgcctgtcgactatgccgcc
gaagcaaggttcctgttggaggagatcgccaagctcacctccagctag
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