Entry |
|
Name |
(RefSeq) probable histone deacetylase 19
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KO |
|
Organism |
bdi Brachypodium distachyon (stiff brome)
|
Pathway |
bdi03082 | ATP-dependent chromatin remodeling |
|
Brite |
KEGG Orthology (KO) [BR:bdi00001]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100846111
03083 Polycomb repressive complex
100846111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:bdi03036]
100846111
Enzymes [BR:bdi01000]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100846111
Chromosome and associated proteins [BR:bdi03036]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
100846111
HDAC complexes
Sin3A-HDAC complex
100846111
BRAF-HDAC complex
100846111
REST complex
100846111
SHIP complex
100846111
MiDAC complex
100846111
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
100846111
Heterochromatin formation proteins
Other heterochromatin formation proteins
100846111
Chromatin remodeling factors
NuRD complex
100846111
|
SSDB |
|
Motif |
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Other DBs |
|
LinkDB |
|
Position |
3:6277070..6283299
|
AA seq |
518 aa
MDLSSAGSGGNSLPSVGPDGQKRRVCYFYDPEVGNYYYGQGHPMKPHRIRMTHSLLAQYG
LLDQMQVLRPHPARDRDLCRFHADDYISFLRSVTPETQQDQIRALKRFNVGEDCPVFDGL
YSFCQTYAGASVGSAVKLNRGHDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKHH
QRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGHSKGKYYSLNVP
LDDGIDDESYQSLFKPIMAKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKY
MRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQELEDKMPINEYYEYFGPDYTLHVAP
SNMENKNTHHQLDDIRSKLLDNLSKLQHAPSVQFQERPPDTELPEADEDQEDQDERHDPD
SDMELDYHTSLEDPARRSNIQGTRVKREFAGTETKDQDGNRVTAEHRGPEPMAEDIGPSK
QVPPVDANAMAVDEPGNVKTEPGSSTKLPDPSAVYQKP |
NT seq |
1557 nt +upstreamnt +downstreamnt
atggacctctcctcggccggctccggcggcaactcgctgccgtcggtcggccccgacggg
cagaagcggcgggtgtgctacttctacgacccggaggtgggcaactactactacgggcag
gggcacccgatgaagccgcaccgcatccgcatgacgcactcgctgctggcccagtacggc
ctcctcgaccagatgcaggtgctgcggccgcaccctgcccgcgaccgcgacctctgccgc
ttccacgccgacgactacatctccttcctccgctccgtcacgcccgagacgcaacaggac
cagatccgggccctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctc
tacagcttctgccagacctacgcgggggcctccgtcggcagcgccgtcaagctcaaccgc
ggccacgacatcgccatcaactggtcagggggcctgcaccacgcgaagaagtgcgaggcg
tccgggttctgctacgtcaacgacatcgtcctcgccatcctcgagctactcaagcatcac
cagcgggttctatatgttgatattgatattcaccatggggatggagttgaggaggcgttc
tacacaactgatagggtcatgacagtttcattccacaagtttggggattatttccctggc
acaggggatgtccgtgatattggccattcaaaggggaagtattactccctgaatgttcct
ctggacgatgggattgatgacgaaagctaccagtccctgtttaagccaataatggccaaa
gttatggaggttttccgccctggtgcagttgtgcttcagtgtggtgctgattcgttatct
ggtgataggttgggttgcttcaacctttcaatcagaggtcatgcagaatgtgtgaagtac
atgaggtctttcaacgttccattgttgcttcttggcggtggtggatataccataagaaat
gttgcacgttgttggtgttatgagacaggagttgcactaggtcaagagcttgaggataaa
atgcctataaatgagtactacgaatactttggtccagattacactcttcatgttgcacca
agtaacatggagaacaaaaatacacaccatcaactggatgatataaggagcaaacttctt
gataatctttcaaaacttcaacatgctcctagtgtccaatttcaagagcggcctcctgat
acagagttacctgaggcggatgaagatcaagaggatcaggatgaaaggcatgaccctgat
tctgatatggaattggattatcacacatctttggaagacccagcaaggaggagcaatatt
caaggtacaagagttaagagagaatttgctggaacagaaaccaaagatcaggatggtaac
agagtaacagctgaacatagaggaccagaaccaatggcagaggacattggtccctcgaag
caagtccctccggtcgatgcaaatgcgatggctgtggatgagccaggaaatgtcaagaca
gaaccagggagctctaccaaattgccagacccatcggctgtttatcagaagccatga |