Brachypodium distachyon (stiff brome): 100846308
Help
Entry
100846308 CDS
T01717
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03030
DNA replication
bdi03420
Nucleotide excision repair
bdi03430
Mismatch repair
bdi03440
Homologous recombination
bdi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100846308
03420 Nucleotide excision repair
100846308
03430 Mismatch repair
100846308
03440 Homologous recombination
100846308
03460 Fanconi anemia pathway
100846308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bdi03000
]
100846308
03032 DNA replication proteins [BR:
bdi03032
]
100846308
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100846308
Transcription factors [BR:
bdi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100846308
DNA replication proteins [BR:
bdi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100846308
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100846308
MMR (mismatch excision repair)
100846308
DSBR (double strand breaks repair)
HR (homologous recombination)
100846308
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
CDC24_OB3
DUF8448
Motif
Other DBs
NCBI-GeneID:
100846308
NCBI-ProteinID:
XP_003570523
UniProt:
I1IEM1
LinkDB
All DBs
Position
3:56700863..56704068
Genome browser
AA seq
628 aa
AA seq
DB search
MAAVRLTPNAVEAVLAGDVNLRPIVQVLDVRCVNVSADRWRGNVSDGVNTVPALFAGQLS
ALARSGAVRGGTILQLDEYVINNVGGGPRRIIVVLNMTVLRAECDIIGNPTITPETRLPN
QNHSGAEQFNGIRQPSVAANSLNTPTMLGHQAPVFQPTAQPSYRPAPSYKNHGPIAKNEA
PARIIPISSLNPYQGRWAIKGRVTAKGDIRRYHNAKGEGKVFNFDLLDSDGGEIRVTCFN
DLVDRFYEVVEVGKVYVVSRGNLKPAQKNFNHLNNEWEIVLDNGSSVDLCPDENSSIPSQ
RFNFRPISEVEDTPNATILDMIGVVISVSPCTTIQKKNGMETQKRIINLKDMSGRSVDVT
MWGEFCNREGSQLQETVERGVFPVLAVKTGRVNDFGGKSVGTISSSQLLIDPDIVEAHSL
RQWFDGGGRDASTQSISRDATPAASRNAIRKTVAQIKEEGLGMEDKPDWVTVKASVIFFK
NENFCYTSCPNKEGDRQCNKKVTKGTSGLWYCDKCNREFTECDYRYLLQLQIQDHSGTAW
VTAFQEAGQELLGVSASDLSRFKEEEDPRFAETMLRCLFQDYLLRLKVKEETYGDERRVK
NTLAKVERFDPAGESKYLLDTISRLVAS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtgaggctgaccccgaacgccgtggaggcggtgctggcgggggacgttaac
ctcaggccaatcgtgcaagtcctcgacgtgcgctgcgtcaacgtcagcgccgatagatgg
cgcggcaatgtctccgacggcgtcaacaccgtccccgcgctgttcgccgggcagctcagc
gccctcgcgcgctccggtgctgtccggggcggcaccatactgcagctcgatgagtacgtc
atcaacaacgttgggggcgggccccgaaggatcattgtcgttctgaatatgacagttctt
cgtgctgagtgtgacatcattgggaatccgacgattactccagaaactagacttcctaac
caaaaccactcgggagcggagcaatttaatggaatacgccaaccttctgtggcagcaaac
tccttgaacacaccaaccatgctcggtcaccaagctccggtcttccaaccaactgcgcaa
ccatcctatcgccctgcacccagttacaaaaaccacggaccaattgccaaaaatgaagcc
cctgctaggataatccccatatcttctttaaatccttatcagggccgttgggctatcaag
ggtagagttactgccaagggagacatccgtcggtaccacaatgcaaaaggtgaaggtaaa
gtgttcaactttgacctgcttgattctgatgggggtgagatacgggtgacatgcttcaat
gatctcgttgatcgtttctatgaggttgtggaagttggtaaggtctatgtggtatcaagg
ggaaacttgaaacctgcacagaagaactttaaccatctgaacaatgagtgggagattgta
ttggacaatggatcatcagtggatctttgtcctgatgagaacagctccattccctcccag
cggtttaacttcagaccgatcagtgaagttgaggatactccgaatgctactatccttgat
atgataggtgttgttatctctgtcagcccttgcaccacaatacagaagaaaaatggcatg
gaaactcagaaaagaattattaacctgaaggatatgtctggtcgaagtgttgatgtaacc
atgtggggtgaattttgcaacagagaaggctcacagctgcaagaaactgttgaacgcggg
gtcttccctgttttggctgtcaaaacaggaagagtaaatgattttggtggcaagtctgtt
ggcacaatttcttcctctcaacttctcatagaccctgatattgtcgaagctcatagtctc
aggcaatggtttgatggtggaggaagggatgcttccactcagtccatatccagggatgcc
actcctgcagcatcaaggaacgctatccgaaagacagtagctcaaatcaaggaggaaggt
cttgggatggaggacaaacctgattgggttacagttaaagcctctgttatattcttcaag
aacgagaacttctgctacacatcttgccctaacaaggaaggtgacaggcaatgtaataag
aaagtgacaaaggggacctctggcttgtggtactgtgacaaatgcaatagagaatttaca
gagtgcgactatagatatcttctgcagctacagattcaagatcactcgggaacagcttgg
gtgacggcatttcaagaggctgggcaagagttacttggtgtctcggcgtcagatctcagc
aggttcaaagaggaggaagatcctcgttttgcagagaccatgctccgatgtttgttccag
gattatctgctgaggctgaaagtcaaagaagaaacatacggggatgagcggagagtgaag
aacaccttggccaaagtggagaggtttgatcccgcgggagaaagtaaatatctgctcgat
acaatttcaaggttggtggcgtcttag
DBGET
integrated database retrieval system
