Brachypodium distachyon (stiff brome): 100846442
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Entry
100846442 CDS
T01717
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100846442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bdi03041
]
100846442
Spliceosome [BR:
bdi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100846442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_TEP1_C
PRP4
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_WDR75_2nd
WD_LRWD1
Beta-prop_SCAP
eIF2A
Beta-prop_Nup120_160
WD40_like
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
100846442
NCBI-ProteinID:
XP_003557864
UniProt:
I1H5E6
LinkDB
All DBs
Position
1:61716217..61721323
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AA seq
509 aa
AA seq
DB search
MENPRPPPPAITPPMAPLPIHPPIAPIPAPPRAPVPAAPSTSGDDDDVEYEVSDDHRAAR
ERHERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREMERRDRLRALMVRL
EAEGQFDRLLRAQEDEQGASEEEAEQIQYPFYTEGTKELLQARVDIAMYSLPLAKARVER
AKRRLGDPDEDPEAEADLVVKQAGEFVLDCSEIGDDRPLTGCSFSRDASMLATSSWSGII
KVWSMPQITKIATLKGHTERATDVAFSPVDNCLATASADKTAKLWNSDGSLLMSFDGHLD
RLARLAFHPSGKYLGTASFDKTWRLWDINTGKELLLQEGHSRSVYGVSFHPDGSLAASCG
LDAFARIWDLRSGRSYCHLEGHVKPVLGVSFSPNGYLVATGSEDNFCRIWDLRARKMLYS
IPAHKSLISHVKFEPQEGYYLATSSYDTKAALWSTRDYKPIKSLAGHESKVTSLDISGDG
QQIVTVSHDRTIKIWSCRSSTEDNEMELD
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccccaggcccccgccgccagccatcacgcctcccatggctcccctccccata
cacccgcccatcgcccccatccccgcccctccccgcgcacccgtgcccgccgccccctcc
acctccggagatgacgacgacgtcgagtacgaggtctccgacgaccaccgcgccgcgcgg
gagcgccacgagcgcgcggtgcaggagctcctgcagcggcggcgcgcctacgccatggcc
gtgcccaccaacgactccgccgtgcgcgcgcgcctccgccgcctcggcgagcccatcacg
ctcttcggggagcgggagatggagcgccgcgaccgcctccgcgcactcatggtccgcctc
gaggccgagggacagttcgaccgcctcctccgcgcgcaggaggacgagcagggagcctcc
gaggaggaggcggagcagatccagtacccgttctacaccgagggtacgaaggaacttctc
caggcgcgcgtcgacatcgcgatgtactcactgcccctcgcaaaggccagggtcgagaga
gccaagcgccgcctcggtgaccctgacgaggaccccgaggcagaggctgaccttgtcgtc
aagcaggcgggggagttcgtgctcgactgcagcgagattggagacgaccgcccgctcact
ggctgctcattctcccgagatgcgtcaatgcttgctacaagctcctggagtgggatcatc
aaagtatggagcatgccacaaataactaaaattgcaaccctgaaaggtcatacagaacgt
gcaaccgatgttgccttttctccagttgataactgcttagcgactgcctcagctgataaa
actgctaaattatggaacagtgatggatcacttctaatgtcttttgatggtcacctggat
cgtcttgctcgccttgcttttcatccatctggaaagtaccttggcacagctagctttgac
aagacttggagattgtgggacattaatacgggaaaggaacttctactccaagaggggcat
agcagaagtgtatatggagttagctttcacccagatggttctttagctgcatcttgtggg
cttgatgcattcgctcgaatttgggatctaagatcaggaagatcatactgtcaccttgag
ggacatgtgaaacctgtcctaggagtcagcttctctcctaatggttatctggttgcaact
gggagtgaagacaatttctgtcgaatatgggatttgagggcaagaaagatgttgtattct
ataccagcccataagagtcttatctcgcatgtgaagtttgagcctcaagagggttattat
ttagcaacttcttcctatgacacaaaagcagcgctttggtcaacacgggattacaaacca
atcaaaagtttggcgggccatgagtcaaaggttactagtttggatatcagtggagatgga
cagcagattgtaaccgtttcacatgatagaacaataaagatttggtcatgcagaagcagc
acagaggataatgagatggagttggattaa
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