Brachypodium distachyon (stiff brome): 100846455
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Entry
100846455 CDS
T01717
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100846455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100846455
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100846455
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100846455
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100846455
U7-dependent histone pre-mRNA processing factors
100846455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF3213
Motif
Other DBs
NCBI-GeneID:
100846455
NCBI-ProteinID:
XP_003559115
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All DBs
Position
1:760801..764074
Genome browser
AA seq
693 aa
AA seq
DB search
MASVATAPPAGKRPTSGGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS
GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS
DYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRILYTGDYSREEDRHLKAAEIPQFSPDVCIVESTYGVQQHQPRHVREKRFTDAIHN
TVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINS
MNERIRNQFAQSNPFHFKHIEPLNSIDNFHDVGPSVVMASPGTLQSGLSRQLFDKWCTDK
KNTCVIPGFVIEGTLSKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFPQTSAFLDE
LRPPNIILVHGEANEMGRLKQKLITQFDGTNIKIVSPKNCQSVEMYFSSEKMAKTIGRLA
EKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRIAVPYSGSFEVIKYRLK
QIYESVESCPEEPDVPTLIVHERVTIRLESESYVTLQWSSDPISDMVSDSVVAMILNIGR
EGPKVVPVEEAEKTQEETEKVARKVVYALMVSLFGDVKVAEGGKFVISVDGDVAHLDGSS
GDVECENAALKERIKTAFRRIQGAVRPIPLSSS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgtcgcgacggcgccgccggcggggaagcggccgacgtcgggcgggcgagag
ggggaccagatggtgatcacgccactcggagccggcagcgaggtcggccgctcctgcgtc
cacatgaccttcaagggccgcactgtcctcttcgactgcggcatccacccggcatactcc
ggcatggcggcgctgccctacttcgacgagatcgacccctccgccatcgacgtcctcctc
gtcacccactttcacttggaccacgccgcctcgctgccgtacttcctggagaagactacg
ttcaaaggccgcgtgttcatgacacacgccacgaaggcaatttacaggttgctgctctcg
gattatgtcaaagtgagcaaagtttcggtcgaggacatgctgtttgatgagcaggacatt
atccgttccatggacaaaatcgaggtcatagacttccaccagacactggaagttaatggg
atacgattctggtgctatactgctggccacgtgcttggtgctgccatgttcatggtggac
attgctggtgttcgcattctttacactggtgactactcccgtgaagaagatcgacacctg
aaagctgccgagataccccagttttcccctgatgtttgcattgtcgagtcaacatatggt
gtgcaacaacaccaaccccgtcatgtaagagagaagcgcttcaccgacgccatccacaac
actgtttcacaaggggggcgcgttcttatcccagcgtttgctcttggtagagcccaggaa
ctgctgcttatcctggatgagtattggtctaaccacccggagctccataagattccaatc
tattatgcctcccctcttgcgaagaagtgcatggctgtctatcagacatacataaactcc
atgaatgaaagaattagaaaccagtttgcacaatccaatcccttccatttcaagcacatt
gaacctttgaatagcatagacaattttcatgatgtgggtccatcagtggtgatggcaagt
ccaggtaccctccaaagtggcctctccaggcagctctttgacaagtggtgcacggataag
aagaacacatgtgttattccaggttttgtcatagaaggcactctttcaaagaccattatc
aacgagcctagagaagtgacgttagcgaatgggctcactgctcctcttcatatgcagatc
ttctacatctccttttcagctcacgctgatttccctcagaccagtgccttcttggatgag
cttcgacctcctaacattattcttgtacatggagaggcaaatgagatggggaggcttaaa
cagaaacttattactcagtttgatggaacaaacataaaaattgtgtctccgaagaattgc
cagtcagtggagatgtatttcagctctgagaaaatggccaagacaattggcagattggca
gaaaaggtacctgaagtgggagaatcagttagtggcctactcgtgaagaagggcttcaca
tatcagatcatggctcctgaggatctccgtgtgtacacacagttatctacagctaacatt
acacagcggatcgcggtcccgtattctggttcctttgaagtcataaagtacagactgaag
caaatatatgagagcgtggagtcatgtcccgaagaacctgatgttccgacactgattgtg
cacgagagagtgaccatccgcctagagtcagaaagctatgttacacttcagtggtcctcg
gatcccataagtgacatggtgtctgattctgtagtggctatgatcttaaacataggccgt
gaaggtccaaaggttgttccggttgaagaagcagagaagactcaggaagaaacggaaaaa
gtggcacggaaggtagtatacgctcttatggtgtcactctttggtgatgttaaagttgca
gagggaggtaaatttgtcatatccgtggatggagatgtcgcgcacttggacgggagtagt
ggtgatgttgaatgtgaaaatgctgcgctgaaggaaaggattaagactgccttccgtcgc
atacaaggcgcagtgagaccaatcccactttcttcctcttga
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