Brachypodium distachyon (stiff brome): 100846563
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Entry
100846563 CDS
T01717
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03015
mRNA surveillance pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100846563
09123 Folding, sorting and degradation
03018 RNA degradation
100846563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100846563
03041 Spliceosome [BR:
bdi03041
]
100846563
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100846563
mRNA cycle factors
Stress granule specific factors
100846563
Spliceosome [BR:
bdi03041
]
Complex C
Other components
Complex C specific factors
100846563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_RdRP1_2
Motif
Other DBs
NCBI-GeneID:
100846563
NCBI-ProteinID:
XP_024313493
LinkDB
All DBs
Position
1:33137537..33142069
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AA seq
623 aa
AA seq
DB search
MAFPATLFRPAVMTPFGPPLYIPGPSFGSSVSVYVGNLEASVTEQQLLDLFSQAVPVVSV
RICDDKVTGRSLGYAYVNFHSHEDAKVALEYFNFTVVNGKSIRVMFSNRDPTLRRSGAAN
LFIKNLEPNIVAKSLHQMFSRFGIILSCKVATDLNGKSKGYGFVQFVSEESAKDAMNALN
GKLANGNGKQLYVDLFIRREERQHIGGASKFTNVYTKNLPKEFTDDDLCRVFAPFGTITS
AVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLNGKIISDVALYVGRAKRKQERQAELKEK
FDKERNDKIRKSKGCNLYLKNLDCSIDDEYLRNLFGRFDDIGTCKVMVDSEGRSKGFGFV
LFTTIEAANKAAQFARRHMVGARTPAMPQNIAPRPFYFGYGVPGVLVRPQATGFGYQQYP
QPVIPGLNPGAPSLMMPYHMLRPIHHQPQQQMAQLPNWNQIVRYMPNACNGPTNSAMAPQ
MDFVAPVVPQISVLTDSVVTAPSISEEPSIDSLATALASAEPEKQHLILGERLQPLVAQL
EPEHAGKVTEMLLELEKAVVLELIESAENLQEKVNQAMESLRPKKEEGTNDPAEPSSLSL
SARAMIPVPFGTCPCDLVGLMFN
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggctttccctgcaaccctgttccgcccggccgtcatgacaccgtttggtccacctctg
tacatcccgggcccgtcgtttggctcgagcgtttccgtgtacgtgggcaacctcgaggct
agcgtcacggagcagcagctcctcgacctcttctcccaggcagtccccgtggtatctgtc
cgcatctgcgacgacaaggttactggaagatctctcggctacgcctacgtcaacttccac
tcgcatgaggatgccaaggttgcattggaatatttcaactttactgttgtcaatggaaag
tctatccgtgtcatgttctcaaatagggacccaacgctgaggaggagcggggctgccaat
ttgttcataaaaaatcttgagccaaacattgtcgccaaaagtttgcaccagatgttctct
aggtttggcattattctttcttgtaaagtggccactgatttaaatggtaaatcaaaagga
tatgggtttgttcagtttgtaagcgaggaatcagctaaggatgccatgaatgccttaaat
ggcaagttggccaatggcaatggcaaacagctctatgttgatctattcattcgtcgcgag
gagaggcagcacatcggtggcgcaagcaaatttacaaatgtgtacacgaagaacttgcct
aaggaattcactgatgacgacttgtgccgagtgtttgcaccatttggtacaattactagc
gcagtagtgatgaaagatggtgatggggaatccaaatgttttggctttgttaactatgag
aaaacagaatatgcggaagaagctgttgaaaaactaaatgggaaaatcatcagtgatgtg
gccttatatgttggaagagctaaacgaaaacaagaaagacaagctgagctgaaagaaaag
tttgataaggaaagaaatgacaaaatcagaaagtctaaagggtgcaatttgtacttaaag
aacctagactgtagtatcgatgatgaatatctcagaaatttatttggaaggtttgatgac
ataggtacatgcaaggtcatggttgattcagaaggaagaagcaagggttttggttttgta
ttgttcacgacaattgaagctgccaataaagctgcacaatttgctcgtcgtcacatggta
ggagctagaacaccagcgatgccacagaacattgcccctcgtcccttctacttcggttat
ggtgtgcctggcgtgctggtccgacctcaagctacaggtttcgggtatcagcagtaccca
caaccagtcattccaggattgaaccctggagctcccagcttgatgatgccataccacatg
ctgagaccaatccaccatcagccgcaacaacagatggctcagctaccaaattggaatcag
atcgtcaggtacatgccaaatgcctgcaatggacctaccaacagtgcaatggctccacaa
atggacttcgtggctccagtggtgcctcagatatctgtgctaactgatagcgtcgtcaca
gccccatctatttcagaggagccaagcatagacagccttgccactgctctagcttctgct
gaaccggagaagcaacatctgattctgggtgagaggctgcagccgctggttgctcaactc
gagcctgagcatgctgggaaggtgacagagatgctgctcgagctggaaaaggctgtggtc
cttgagttgatagagtccgcagaaaatctccaggagaaagttaaccaggcaatggaatct
ctgcggccaaagaaagaggaaggcactaatgatcctgccgaaccttcatcccttagtttg
agtgctagagcgatgatccctgtaccgtttggcacctgtccctgcgatctagttggattg
atgtttaattaa
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