Brachypodium distachyon (stiff brome): 100846625
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Entry
100846625 CDS
T01717
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100846625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdi03021
]
100846625
Transcription machinery [BR:
bdi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
100846625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
ELL
DUF3069
Motif
Other DBs
NCBI-GeneID:
100846625
NCBI-ProteinID:
XP_010234660
UniProt:
I1I3H5
LinkDB
All DBs
Position
3:complement(22193572..22201179)
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AA seq
531 aa
AA seq
DB search
MGSVDLVLKPACEGCGSPSDLYGTGCKHTTLCSSCGKSMALSRARCLVCSAPITNLIREY
NVRANASTDKAFSIGRFVTGLPPFSKKKNAENKWSLHKEGLQGRQLTDKMQEKYNRKPWI
LEDETGQYQFQGHMEGSQSATATYYLLMMQGKEFHAFPAGSWYNFSKVAQYKQLTLEEAE
EKMNKRKTSATGYERWMMKAATNGPAAFGSDIKKLEPTNDGEKESARPKKGKDNEEGNNS
DKGEENEEDEAARKDRLGLSKRGMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDEA
VDIDPEERADLAPEIPAPPEIKQDDEENEEEGGLSKSGKELKKLLGRASGQNESDADEDD
EDDDQDDESSPVLAPKQNDQPKDEPVDNSPAKPTPSSGHARSTPPASKSKQKRKSGGDDA
KTSGSAASKKAKVEPDTKTSSIKEEAPSSLKHTSKASASSRNANVSPVTEDEIRTVLLAV
APVTTQDLVSRFKSRLRGPEDKNAFAEILKKISKIQKTNGHNYVVLREDKK
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgtggacctggtgctgaagccggcgtgcgagggctgcggctccccgtcggac
ctctacggcaccgggtgcaagcacaccacgctctgcagctcttgcggcaagtcgatggcg
ctctcccgcgcccgatgcctcgtctgctccgcccccatcaccaacctcatcagggaatac
aatgtgcgggcaaatgctagcacggataaggcattctctattggaagattcgtcactggt
ttacctcctttctcaaagaaaaagaatgctgagaacaaatggtctcttcataaggagggc
ctgcaaggacggcagcttactgacaaaatgcaggagaaatacaaccggaagccatggatt
ttagaagatgaaactggtcaataccagtttcagggtcatatggagggatcacagtcagca
acagctacatactacttgttaatgatgcagggcaaggaatttcacgcatttcctgctggt
tcctggtataacttcagtaaagttgcacagtacaaacaactgactctggaagaggccgaa
gagaagatgaataagagaaagactagtgcaactggttatgaacgttggatgatgaaagca
gctacaaatgggccagctgccttcggttcagatataaagaaacttgaacctacaaatgat
ggagaaaaagaaagtgctcgtcctaagaaggggaaagataatgaggagggtaataattct
gataaaggtgaggaaaatgaagaagatgaagcagctcgaaaagataggcttgggctctct
aaacgtggcatggatgatgacgaggaaggtggaaaagatctggactttgatttggatgat
gaaattgagaaaggtgatgactgggagcacgaagaaacattcaccgatgatgatgaggct
gtggatatcgacccagaggaacgggctgatttagctcctgaaattcctgctccacctgaa
attaagcaggatgatgaagagaatgaagaagaaggtggtctgagcaagtcaggaaaagaa
ttaaagaagctgcttgggcgtgcttctggacaaaatgagtcagatgcagacgaggatgat
gaagatgatgatcaggatgatgagtcatctccagtgcttgctccaaagcagaatgatcaa
cctaaagatgaacctgttgataacagcccagctaaaccaacaccttcatcaggacatgct
cgcagcacacctcctgcatccaaatccaagcaaaagaggaagtcaggtggtgatgatgcg
aaaacatctgggagtgcagcttcaaagaaagcaaaggtggaaccggataccaaaacatca
tccatcaaagaggaggcgccatcttccttaaaacatacatcaaaggcctctgcttcatca
agaaatgcgaacgtatctcctgtgacagaggatgaaattaggactgttcttcttgcagtc
gctccagtcactacacaagatttagtatccagatttaagtctagactccgaggtccagag
gacaagaacgcctttgctgaaattctgaagaaaatttcgaagatacagaagactaatggt
cacaactatgtcgtccttagagaggataagaagtga
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