Brachypodium distachyon (stiff brome): 100846690
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Entry
100846690 CDS
T01717
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi04120
Ubiquitin mediated proteolysis
bdi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100846690
04120 Ubiquitin mediated proteolysis
100846690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bdi04121
]
100846690
Enzymes [BR:
bdi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
100846690
Ubiquitin system [BR:
bdi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100846690
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_Vps41
zf-RING_5
zf-HC5HC2H
U-box_ZFPL1
FlxA
Motif
Other DBs
NCBI-GeneID:
100846690
NCBI-ProteinID:
XP_014753283
UniProt:
I1GYV2
LinkDB
All DBs
Position
1
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AA seq
494 aa
AA seq
DB search
MIRLQTYTAFSLLATMSAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGTLREAEVERLNEQSWREVVEILFAVTIFRQDFSVAFLAMVAALLLVKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMAFLLVVDCLFLSKSLGSLIQKREASVAIFFSFEYM
ILATSTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRISDYVRYRKITSNMNERFPDATTEELNASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIIPPDNGRAASARQHGAQPGAQPAAGTG
NPSSGEAPSENVNMHQAKLEAAASAASLYGRSLAYPPASTLNRYSSPLHATSSTSQSGEA
SSSTGNPLAPRPFYSHGPVGSIASSRDPQISLQKAYENAIRSQIEMLHIQLQMVQQAATP
SATNNGSSKHPENE
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgatccggttgcagacgtacaccgcgttcagcctgctggctacgatgtcggcggtgtac
tacgccttcagcagccgggagcagttctacccggcgatggtctacctttccacgtccaag
atctgcttcgttctgctgctcaacacgggcctcgttgccatgtgcgtcgcctggcagctc
gtgaagcgcctcttcctgggcacgctccgggaggccgaggtcgagcggctcaatgagcag
tcatggagggaagtcgtggagatcctcttcgcggttaccatcttccgccaggacttctct
gtcgctttccttgccatggtcgccgccctgctcctcgtcaaggcgctgcactggcttgca
cagaagagggtcgagtacattgagaccacgccctccgtgcctatgctgtcccacataagg
atcgtgtcctttatggcattccttcttgttgtggactgcctcttcctgtccaagtcgctg
gggtcactgatacagaagcgtgaggcatctgtcgctatcttcttttcctttgagtatatg
atactagcaacgtccacagtatcaacattcgtgaaatatgtattctatgtcagcgacatg
ctaatggaaggtcaatgggagaaaaaggcagtgtatacattttatttggagctcatcagt
gaccttgtgcacttgtctttatatatgctcttcttcatagcaatctttctgaactacggt
gtcccactgcacttgattcgtgagctctatgagaccttccgcaatttcagaattcgcata
tcagattatgtacgctacagaaagataacttccaatatgaatgaacgctttccagatgct
acaacagaggagctcaatgcgagcgatgcaacatgtattatttgtcgcgaagagatgacc
actgcaaagaagctgctttgcgggcacttgttccatgtacactgtttgaggtcatggcta
gagcgccaacatacttgccccacatgtagagctccaattatcccgccggataatggacgt
gcggcatcagcacgacaacatggagctcaacctggagctcagcctgctgcaggcactggt
aatccgagttcgggagaagcaccaagtgagaacgtgaacatgcaccaagctaaacttgag
gctgctgcttcagctgcatccttatatgggagatctcttgcttatcctccagcgagtact
ttgaataggtactcatcacctctgcatgccacatcaagtacttcacaatcaggagaagca
agcagttccactggcaatcctttagcacctcgtcctttttattcacatggcccagttggt
tcaatagcaagcagtagagaccctcaaatttccctgcaaaaggcatatgaaaacgctata
aggagccagatagagatgttgcacatccaattgcaaatggtgcagcaagcggctactcca
tcagcaactaacaatggcagttctaagcacccggaaaatgagtga
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