Brachypodium distachyon (stiff brome): 100846807
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Entry
100846807 CDS
T01717
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi00040
Pentose and glucuronate interconversions
bdi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
100846807
Enzymes [BR:
bdi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
100846807
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
100846807
NCBI-ProteinID:
XP_003567253
UniProt:
I1HT63
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Position
2:53093062..53094966
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AA seq
396 aa
AA seq
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MAPPQSDEQLGAEPAMEGLTIPPDQNDEPTMDGYTVPPHDHSVDQLIGNLPPMQDTTFIP
YAAVDSSLRAMAGQAEGFGRHAIGGLHGDVYHVTTLADDGPGSLRVGCRRQEPLWIVFDV
SGTIHLSSGLRVSSYKTIDGRGQRVTLSGKGLLLRECEHVILCNLEVEGGRGHDADAVQI
KPRSRHVWVDRCGLRDFADGLLDVTCGSTDVTVSRCRFSAHDKAVLIGASSGHVQDRGIR
VTIHHCFFDGTRQRQPRVRFGRVHLYNNYTRGWGIYAVCASVESQIVSQHNIYEAGEKKK
AFMYMNEQAADRDKSSSGSIRSEGDLFLNGAEDCNENDSEENLWDFEVKNCYQSCSAQPA
SLALKELLEYCTGWQPVPLPEDIRFAENCAAATTDI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctcctcaatccgacgagcaactcggcgccgagccagcaatggagggtctgacg
atacctcctgatcagaacgacgagccaaccatggacggctacactgtgcctcctcacgat
cattccgtggaccagctgatcgggaacctgcctcccatgcaagacacgacgtttatcccg
tacgcagcggtggattcctcgctgcgcgccatggccggccaggccgagggcttcggccgc
cacgccatcggcggcctccacggcgacgtctaccatgtcaccaccctcgccgacgacggg
ccggggtcgctgcgggtcggatgccggaggcaggagccgctgtggatcgtcttcgacgtg
tcgggcaccatccacctctcatcaggcctccgcgtgtcgtcctacaagaccatcgacggg
cgcgggcagcgggtgacgctctccggcaagggcctcctgctgcgtgagtgcgagcacgtg
atcctctgcaacctggaagtcgaaggcgggcgcgggcacgacgcggacgccgtccagatc
aagccccgatccaggcacgtgtgggtggaccgctgcgggctgcgggacttcgccgacggg
ctcctcgacgtcacctgcgggagcacggacgtgacggtgtccaggtgccgcttctcggcg
cacgacaaggccgtgctcatcggtgccagcagcggccacgtccaggacaggggcatccgg
gtcaccatccaccactgcttcttcgacggcacaaggcagcggcagccccgcgtcaggttc
ggcagggtgcacctctataataactacaccaggggctggggcatctacgccgtctgcgcc
agcgtcgaatcacagattgtctcccagcacaacatctacgaggcgggggagaagaagaaa
gcgttcatgtacatgaacgaacaggcggcggacagggataagagttcaagcgggagcatc
cggtctgaaggcgacctgttcctgaacggtgcggaggactgcaatgaaaatgattctgaa
gaaaacctgtgggacttcgaggtcaagaattgctaccagtcgtgctcggcccagcctgcg
tcattggcgctcaaggagctcctggaatactgcaccggctggcagccggttccgttgccg
gaagacattcgtttcgccgaaaattgtgctgctgctacgactgacatctga
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