Brachypodium distachyon (stiff brome): 100846917
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Entry
100846917 CDS
T01717
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C isoform X1
KO
K07466
replication factor A1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03030
DNA replication
bdi03420
Nucleotide excision repair
bdi03430
Mismatch repair
bdi03440
Homologous recombination
bdi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100846917
03420 Nucleotide excision repair
100846917
03430 Mismatch repair
100846917
03440 Homologous recombination
100846917
03460 Fanconi anemia pathway
100846917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bdi03000
]
100846917
03032 DNA replication proteins [BR:
bdi03032
]
100846917
03400 DNA repair and recombination proteins [BR:
bdi03400
]
100846917
Transcription factors [BR:
bdi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
100846917
DNA replication proteins [BR:
bdi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
100846917
DNA repair and recombination proteins [BR:
bdi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
100846917
MMR (mismatch excision repair)
100846917
DSBR (double strand breaks repair)
HR (homologous recombination)
100846917
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
zf-CCHC_2
tRNA_anti-codon
zf-CCHC_5
DUF223
CDC24_OB3
Zn_ribbon_RRN7
RADX
Motif
Other DBs
NCBI-GeneID:
100846917
NCBI-ProteinID:
XP_003569087
UniProt:
I1HMV3
LinkDB
All DBs
Position
2:38866413..38871298
Genome browser
AA seq
945 aa
AA seq
DB search
MEPPRLTEGAVKQLSEHPHGAGTIFPVVQVGDVKIVNTKGGPQQQSERYRMLISDGVNSQ
QSMLATPLNALVKDGTLRAGSIVHLVETMCNTIQNRRIIIVTKLDVLQTECPMIGTPKMC
QMKILPQEQEPNLPASAAQTYSGSYSGNPGMLGSSVAPMVEQAANSLSYGGPYKGIHGTV
GSSIGRAVEPGPNNVLSGGSYGTVPAQNTMNANVVQPDSQLPLLSSHQNQRFAIPGAGRG
FGPPGNIYGRPAQPSYQQPPPAYRNSGPVAKNEAPPRVTPISALNPYQTTWTIKARVTAK
SRVTHFINASGPGTVFNFDLLDAHGGEIRAKCFKAAVDQFYNLIEVDKVYLISRGAIRPA
QKKFNPLNNDYDLTLDVSTSIEICSGDDSSIPRQQFNFRQISEIANMDGGSMVDLLGVVT
SVSPTVPLMKKDGNETKKRNLQLKDMSGCSVEITFWGDFCDAEGQQLQSLCDSGSSPMLV
LKSGRVNDFNGKSVGTISSSLIKINPDFPDAERLRQWYITEGKNAACSSLSVATMGRTDV
RKTIAEIKGENLGQSDKPAWITVIGSIFHIANDPFCYPACTMQVNGRQCNKKVTNNGDGM
WYCDKCEQSSPNCEYRYLLNCQMQDHTGSTYCNAFQEAGKDIIGVTAQELFRIKHEEQDD
VQFAEIMQRARHQLFLLKLKVKEEIYNDEARVKYTIFKAEKLDDPRFLLGIIDRLLVEDD
AGSTPGVNHAAAANAGFTNSEAGQSVVTSNNTYAMNMGGPNQFGQQASLSARVPTTSRAT
RYAQTCSVCGSNGHNAQNCPATMDDMHQPAPSVGFTASSYGSSAGGNASSGLCFKCNQPG
HFSRDCPGLTTSYGNSAVNANASSNLCFKCNQPGHYSRDCPAQGSSYPSSAGGNSGANLC
FKCNQPGHYARDCPAQAAGAPQHPAYGNNASAASGGYSRQYVGSF
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggagccgccgcggctgacggagggggcggtgaagcagctgtcggagcacccccacggg
gccggcaccatcttcccggtggtgcaggtaggggacgtgaagatcgtcaacaccaagggc
ggcccgcagcagcagtcggagcgctaccgcatgctcatctccgacggggtcaactcgcag
cagtccatgctcgccaccccgctcaacgccctcgtcaaggatggcacgctccgcgccggc
tccatcgtccacctcgtcgagaccatgtgcaacaccatccagaaccgcaggatcattatt
gttaccaaacttgatgttctgcaaactgagtgccccatgattgggacgccgaagatgtgt
cagatgaaaatcttacctcaagaacaggagcctaacttaccagccagtgctgctcaaaca
tatagtggaagctattctggtaacccaggcatgctgggctcttctgttgctccgatggtg
gagcaggctgctaacagtctttcatatggtggaccctacaaaggcattcatggcacagta
ggctcttctattggtcgggcagtcgaacctggtcctaacaatgtgctgtcaggtggatct
tatggtacagtgccagcacagaacacaatgaatgccaatgtggtgcagccagactctcag
ctgcctttactgagctctcatcaaaaccagaggtttgcgatacccggggcaggtcggggc
tttggtcctcctggtaatatttatgggcgtcctgctcagccttcgtatcagcagccacct
ccagcatataggaatagtggcccagttgctaagaatgaagctcctccccgtgttactccg
atttctgcgttgaacccgtaccaaactacatggacgataaaggctagggtgactgcgaag
tctcgtgtcactcattttatcaatgcttcaggtccaggaacagtcttcaactttgatctt
cttgatgcacatggtggtgaaattcgtgcaaaatgctttaaggcggcagttgatcagttc
tacaatctaattgaggttgataaggtgtacttgatatctagaggggcgataagacccgca
cagaagaagtttaaccctttgaacaatgactatgatttgactctggacgtgtcaacatct
atagaaatttgttctggtgatgatagcagcatccctaggcagcagttcaatttccgacag
atcagtgaaatagcaaacatggatggaggatccatggtagatttgcttggggttgttaca
tcagttagccctactgttccactaatgaagaaggatggcaatgaaactaagaaaagaaac
cttcagctgaaggacatgtctggttgcagcgtggaaataaccttttggggggacttctgt
gatgctgaaggtcagcagctgcagtcactgtgcgattctggatcaagtccaatgcttgtc
ctgaaaagtggtcgtgtcaatgacttcaacggcaaatctgtgggcacaatcagctcaagc
ttgataaaaataaatccggattttcctgatgcagaaaggctgaggcagtggtatataact
gaaggaaaaaatgctgcttgcagttctttatctgtggcaaccatgggcaggactgatgtt
cgaaaaactattgcagagatcaagggtgaaaatctggggcaatcagataagcctgcttgg
atcacggttattggttcgatttttcacattgccaatgaccctttttgttatccagcttgc
acaatgcaggttaatggtaggcagtgcaacaaaaaggtcacaaataatggtgacgggatg
tggtattgtgataaatgcgagcagagttctccaaactgtgagtataggtacttgctaaat
tgtcagatgcaggatcacaccggttctacctattgcaatgcattccaagaggctggcaag
gatattattggtgtcaccgcgcaagagcttttcaggataaaacatgaagaacaagatgat
gtacaatttgcagaaatcatgcagcgggcccgtcatcagctatttctgttaaagttgaaa
gtcaaggaagaaatctacaatgacgaggcacgtgtgaaatacaccatttttaaggctgaa
aaattggacgacccacgttttcttcttggaataattgatagacttttggtggaggatgac
gcgggttccacacctggtgtgaatcacgctgctgctgctaacgctggttttaccaactct
gaagctggacagagtgtggtaacttccaacaatacctatgccatgaacatgggtggccca
aatcagtttgggcagcaagcaagtttatctgccagggtgcctaccacatcacgagcaaca
cggtatgcgcagacttgcagtgtttgtggttccaatgggcataatgcacagaactgccct
gcaaccatggatgatatgcatcaaccagcaccaagtgtgggcttcactgctagttcatat
ggctcttcagctggcggcaacgccagctcaggcttgtgcttcaaatgtaatcagcctggg
cacttctctagagattgtccagggctgactacctcctacggcaattcagccgtcaacgcc
aatgccagctctaacctgtgcttcaagtgtaatcagcctgggcactattctcgagactgc
ccagcgcagggtagctcctacccctcttcagctgggggcaacagcggtgcgaatctgtgc
ttcaagtgtaatcaaccggggcactacgctagggactgtccggcacaggcagctggtgca
ccccagcacccagcgtatgggaataatgcctccgccgcatcaggaggatacagcaggcag
tatgttggtagcttctga
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