Brachypodium distachyon (stiff brome): 104583006
Help
Entry
104583006 CDS
T01717
Name
(RefSeq) putative E3 ubiquitin-protein ligase SINA-like 6
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104583006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bdi04121
]
104583006
Enzymes [BR:
bdi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104583006
Ubiquitin system [BR:
bdi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
104583006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_ZnF
Sina_RING
zf-TRAF_2
RecO_C
Motif
Other DBs
NCBI-GeneID:
104583006
NCBI-ProteinID:
XP_010232949
LinkDB
All DBs
Position
2:1244766..1245576
Genome browser
AA seq
237 aa
AA seq
DB search
MEGSSNSNNNNNKSGVKMQSIMGMEVFDCAVCSSPLSPLVFRCSNGDCLCSPCRDKLPAV
ERLATQRCLSMERVVDNIFVPCKHGCDAKITYHQQRGHQYRCPERPGMCKCLVSGCGFVT
ATEELFDHLTAGAGIHRLPWEDIKYFVPFKHEVRPGIRLLRGRNKLLFLLEVARESSPGH
VVSLTFVRPNGLRSTVGCSVFLCGFHHYQVSKLNIGPDVASKQILCVVSDGKYGVDL
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atggagggatcaagcaactccaacaacaacaacaacaagagcggcgtgaagatgcagagc
atcatggggatggaggtgttcgactgcgccgtctgctccagccccctcagccctctagtc
ttccggtgctcaaacggcgattgcctctgctcaccctgccgcgacaagctcccggcggtc
gagcgcctcgccacgcagcgctgcctcagcatggagcgcgtcgtggacaacatcttcgtc
ccctgcaagcacggctgcgacgccaagatcacataccaccagcaacgagggcaccaatat
aggtgcccggaaaggccgggcatgtgcaagtgcctggtctccggctgcggcttcgtcacg
gcaaccgaggagctcttcgaccatctcaccgccggcgccggcatccaccggctgccatgg
gaggacatcaagtacttcgtgccgttcaagcacgaggtcaggccgggcattcggcttctt
cgcggcaggaacaagctcctcttcctgcttgaggttgccagggagtcatcccccggccat
gtggtttctctcacgttcgtccggcccaacggtttgagaagcacggtcggatgctccgtg
ttcttgtgcggctttcaccattaccaggtttccaagctcaacattgggcctgatgttgca
tccaagcagatattgtgcgtggtgtccgatggaaaatatggtgttgatctctag
DBGET
integrated database retrieval system
