Bdellovibrio sp. KM01: HW988_01675
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Entry
HW988_01675 CDS
T08445
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HW988_01675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdk03019
]
HW988_01675
Enzymes [BR:
bdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HW988_01675
Messenger RNA biogenesis [BR:
bdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HW988_01675
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
NAT10_TcmA_helicase
AAA_19
AAA_22
SBF_like
Motif
Other DBs
NCBI-ProteinID:
QLY25782
LinkDB
All DBs
Position
complement(314136..315383)
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AA seq
415 aa
AA seq
DB search
MKFEKFHLSEDLLRNLEDNGYFRTTDIQFKAIPSILKGEDVLAIAQTGTGKTAAFAIPLI
NMIHSEKSSKRAIGIKCLVLVPTRELAQQIGEVFNKLSKHTKVKPFALFGGIEQDAQIKK
LQDGIDVLIATPGRMFDLISQGFINLNFIEHLVLDEADQMLDLGFIDDIEDIKRKLNRRH
QTLFFSATINPEIKKLAYSQVRSNAIRIEISPEDPVSKNVKHFVMFVEMDDKRFFLAEYI
NQNADGKFIVFVRTRVRAERVAKALERVNIASLTLHGEKDQVDRADVMAAFRKGDCKIMI
ATDVSARGIDIPDVTHVINYDLPEKPENYVHRIGRTGRGFNKGIAVSFCATEEKEQLANI
EALLTKPVEVIKVNKADYKIIASQPETSDIDKSLQALLDSEDLFANPKKAKWKKK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaaaaattccacctctctgaagaccttcttcgcaatcttgaagacaacggc
tatttccgcacaactgatattcagttcaaagccattccatccatccttaaaggcgaagac
gttctggctattgcccaaaccggcaccggtaaaacggcggcttttgcaattcctctgatc
aacatgatccactccgaaaaaagcagcaaacgtgcaatcggcatcaaatgcctggtactt
gttccgactcgtgagttggctcagcaaatcggtgaagtgtttaataaactttccaaacac
acaaaggtaaaacccttcgccttgtttggtggtatcgaacaagacgcacagatcaaaaaa
cttcaagacggcatcgacgtattgatcgcaactccaggccgtatgtttgacttgatttct
caaggcttcattaatctgaattttatcgaacacctggttttggatgaagccgatcagatg
ttggatttgggattcattgacgatatcgaagacatcaaaaggaaattaaaccgtcgccac
cagactttatttttctctgcgacaatcaatcctgagatcaaaaagcttgcatactctcaa
gttcgcagtaacgcgatccgaatcgaaatttcgccggaagatcctgtttcaaaaaacgtg
aaacactttgtgatgtttgtcgaaatggacgacaagcgtttcttcttggcagagtacatc
aatcaaaatgcagatggtaaattcatcgtcttcgttcgcacgcgtgtacgtgctgaacga
gttgctaaagctctggagcgcgtgaacatcgcctctttgactttgcacggggaaaaagac
caagtcgaccgtgctgacgtgatggcagccttccgtaaaggcgattgcaaaatcatgatc
gcgactgatgtaagtgctcgtggtatagatatccctgacgttacacatgtcattaactat
gacttgccggaaaaacctgagaactacgttcatcgtatcggtcgtacaggccgcggtttt
aacaaaggtatcgcagtttccttctgtgctacggaagaaaaagaacaacttgcaaatatc
gaggctctgttgaccaagccggtcgaagttattaaagtaaacaaagccgactataaaatt
atcgcttcgcaaccggaaacttcagatatcgataaaagccttcaagctttgcttgatagc
gaagatctgtttgcaaatcctaaaaaagcgaagtggaagaaaaagtaa
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