Bdellovibrio sp. KM01: HW988_03945
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Entry
HW988_03945 CDS
T08445
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bdk
Bdellovibrio sp. KM01
Pathway
bdk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bdk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HW988_03945 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdk03021
]
HW988_03945 (rpoC)
03400 DNA repair and recombination proteins [BR:
bdk03400
]
HW988_03945 (rpoC)
Enzymes [BR:
bdk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HW988_03945 (rpoC)
Transcription machinery [BR:
bdk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HW988_03945 (rpoC)
DNA repair and recombination proteins [BR:
bdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HW988_03945 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QLY26190
LinkDB
All DBs
Position
794774..798907
Genome browser
AA seq
1377 aa
AA seq
DB search
MRDLLNFFDKPKDPLSFDAVRVSLASPEMIRDWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTQTKVRRERLGHIELATPVAHIWFLRSL
PSRIGNLLNLSLKDVEKVLYCEAHVVIDPMETTLEEGQVLTEEALNAALNEFGPSFKYGM
GGEAVRDLLRKIDPEYLSRKLRMEAKDVKSEAGMKKITKRLKVVEAFKGSINKPEWMMLE
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRMLQ
EAVDALLDNGRRGKTFTGPNKRPLRSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFVYNKLEEKGLAATIKQAKKLVEQETVEVWDILADVVKEHP
VLLNRAPTLHRLGIQAFEPVLHEGKAIQLHPLVCGAFNADFDGDQMAVHVPLSVESQVEA
RVLMMSTNNVLSPASGKPIINPSQDIVLGLYWLTRNRLGAKGTGKIFSTVQEAQYAYETG
LVDLQATCKVRINGKLQETTVGRAILSDSVPKEVPFNDVNVIMTKKQIAALIDKTFRLAG
AKATCILADKIMELGFKYSTSAGMSIGIDDMVIPAAKAPMIADAEKQVTEIQTQYDEGLI
TDGERYNKVVDIWAQTADKIAKEGMNAIEKQTFVIDGKEVVGPSFNPIYIMAESGARGSA
TQIRQLGGMRGLMAKPSGEIIETPITANFREGLTVIQYFISTHGARKGLADTALKTANSG
YLTRRLVDVAQDVVVSELDCGIDDGLEITPVYEAGEIIQNIGDRILGRTTLRDVVDPQTN
NVVVRANQEITETDVKTIEGLGIDKVDIRSALVCQSKRGVCVKCYGRDLSRGATVNLGET
VGIIAAQSIGEPGTQLTMRTFHLGGAASRSVEQSVHTSRYDGVLKLQNVHAVTNRNGKLT
VMNRNGSALVIDEAGRERENFKLVYGAVLNFKEGDKVAKGQTVVEWDPYSNPIIAEVSAK
IQYQDIEEGSTMQEQVDAVTGFATKVIMESKSSDIKPTVFLVDGNGKTLNLPGRDIPARY
LIPVGAQLLAADGQEIHAGDVIAKMHRETSKTKDITGGLPRVAELFEARKPKEAAIISEI
DGYVTFGKDVKGKQRVIVTPEVGEQKEYLIPKGKHVAVREGEYVRAGEALMDGPTNPHDI
LAVLGAKALSAYLVDEIQEVYRLQGVAINDKHIEVIVRQMLRKVEIKDAGDSRFLAGEQA
ERYAFDEENARLSREGGQLATCNPLLLGITKVSLSTDSWISAASFQETTKVLTEAAINSR
TDHLRGLKENIIMGRLIPAGTGLTSYKRWKVSVAEDDDVNYVASLPGMSPSTQPHQG
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
ttgagagacttgttgaattttttcgataaaccaaaagatccactttcgtttgacgccgta
cgagtatcgttggcgtcacctgaaatgattcgtgattggtcatttggtgaagttaagaag
ccggaaacaattaactatcgtacattcaagcctgaacgtgatggcttgttctgtgcgaaa
atcttcggtcctattaaggattacgagtgcttgtgcggtaagtataaacgtatgaagtac
cgtggcgtcgtctgtgaaaagtgcggcgttgaagttacacaaactaaagttcgccgtgaa
cgtctaggtcacattgagcttgcgactccagttgcacacatctggttcttgcgctctcta
ccttctcgtatcggtaacttgcttaacctttctttgaaagatgttgagaaagttttgtat
tgtgaagcccacgtggttatcgatccaatggaaacaacattggaagaaggccaagtattg
actgaagaagctttgaacgcagctttgaacgaattcggtccttcattcaaatacggcatg
ggcggcgaagctgttcgtgaccttttgagaaaaatcgatcctgaatacttgtctcgcaag
cttcgtatggaagctaaagacgttaagtctgaagcgggcatgaaaaagatcactaaacgt
cttaaggttgttgaagctttcaaaggctctatcaacaaacctgaatggatgatgttggaa
gcacttccagtgttgcccccagatctacgtcctctagttccactagatggcggtcgtttc
gcgacttcagatctaaatgatctttaccgtcgtgtgatcaaccgtaataaccgtttgaaa
cgtcttcaagagcttaacgctccagacatcatcatccgcaatgaaaaacgtatgcttcaa
gaagctgtcgatgcattgttggataacggtcgtcgcggtaagacattcactggtccaaat
aaacgtcctcttcgctccctttctgatatgttgaaaggtaagcaaggtcgtttccgtcaa
aatctacttggtaaacgtgtggactactctggtcgttccgttatcgttgtaggtccgacg
ttgaaattgcaccaatgcggtcttcctaagaaaatggctttggagctattcaaaccattc
gtttacaacaaacttgaagaaaaaggcctagcagcaactatcaagcaagctaagaaattg
gttgagcaagagacagttgaagtgtgggacatcctggctgacgttgttaaagaacatcca
gttcttttgaatcgtgcgccaactcttcacagacttggtatccaagccttcgaaccagta
cttcacgaaggtaaagcgatccaattgcatccactagtgtgcggtgccttcaatgccgac
ttcgacggtgaccaaatggcggttcacgttccactttctgtggaatctcaagttgaagct
cgtgttttgatgatgtctacaaacaacgttctttctccagcttctggtaagccaatcatc
aatccatcacaagatatcgtgttgggcttgtactggttgactcgtaaccgtttgggcgca
aaaggaactggcaaaatcttctcgactgttcaagaggcgcaatacgcttacgaaacaggc
ttggtagacttgcaagcgacttgtaaagttcgtatcaacggtaagttgcaagaaacaact
gtaggtcgcgcgattctttctgatagcgttcctaaagaagttcctttcaacgacgtgaac
gtaatcatgactaagaaacaaatcgcagctttgatcgacaagactttccgtcttgctggt
gcaaaagcgacttgtatcctggctgataaaatcatggaacttggtttcaaatattcaacg
tctgcaggtatgtctatcggtatcgatgacatggttatcccagctgccaaagctccgatg
atcgctgacgctgaaaaacaagttactgaaatccaaactcagtacgatgaaggtttgatc
acagatggtgagcgctacaataaggtagtggatatctgggcacaaactgcggataagatc
gctaaagaaggtatgaacgcgatcgaaaaacaaacattcgtaattgatggcaaagaagta
gtaggaccttcattcaatcctatctacatcatggctgaatccggagcccgtggttccgcg
actcagatccgtcagttgggtggtatgcgtggtttgatggcgaaaccttctggtgagatc
atcgaaactccgatcactgcgaacttccgtgaaggtttgacagttattcagtacttcatc
tctacgcatggtgctcgtaaaggtttggccgatacagcattgaaaacagcgaactctggt
tacttgactcgtcgtttggttgacgttgctcaagacgtagtagtttctgagttggattgc
ggaattgacgacggtttggaaatcactccagtttacgaagctggtgagatcatccaaaac
atcggtgatcgtatccttggtcgtacgacattgagagatgttgttgatcctcaaactaac
aacgtagttgttagagcgaaccaagagatcacagagactgacgttaaaactatcgaaggc
ttgggtatcgacaaagtcgacatccgttcggccctagtgtgccaatctaaacgtggcgtg
tgtgtgaaatgttacggccgcgacttgtctcgtggtgcgactgtgaaccttggtgaaaca
gttggtatcatcgcagcacaatctatcggtgagccgggtactcagttgacgatgcgtacg
ttccacttgggtggtgccgcttctcgttcagttgagcaatcagttcatacatctcgttat
gatggtgttcttaaacttcaaaacgtacatgcagttactaaccgtaacggcaagttgaca
gttatgaatcgtaacggatctgcacttgttatcgacgaggcaggccgcgaacgtgaaaac
ttcaagcttgtttacggtgctgtattgaactttaaagaaggtgacaaagttgccaaaggg
caaacagttgttgagtgggatccatactcgaatccaatcatcgcagaggtttctgcgaag
atccaatatcaggatatcgaagaaggttctacaatgcaggagcaagtggatgcggtaact
ggtttcgcgactaaagttatcatggaatctaaatcttctgacatcaaaccaactgtgttc
ctagttgatggcaatggtaagacattgaatcttcctggtcgtgacatccctgcgagatat
ttgatcccagtgggtgctcagcttctagcagctgacggtcaagaaattcatgccggtgac
gtaattgcgaaaatgcatcgtgagacttcgaaaacgaaggatatcacgggcggtcttccg
cgcgttgctgaattgtttgaagctcgtaaaccgaaagaagcagcaatcatctctgaaatt
gatggttatgtgacattcggtaaagacgttaaaggtaaacaacgtgtaatcgtaactcct
gaagtgggtgagcaaaaagaatatcttatccctaaaggtaaacacgttgctgtaagagaa
ggtgagtacgtaagagccggtgaggcgttgatggacggtccaacaaatcctcatgacatt
ctggcggttctaggtgctaaagccctatctgcataccttgttgatgaaatccaagaagtt
taccgacttcaaggtgttgctatcaatgataagcatatcgaagtgatcgttcgccaaatg
ctacgtaaagtagaaatcaaggacgctggagacagccgcttcttggctggtgaacaagct
gaaagatacgcttttgacgaagaaaatgctcgtttgagccgtgaaggtggacaacttgct
acatgcaatccacttcttcttggtatcacgaaagtttctttgagcactgatagctggatc
tcagcagcgtcattccaagaaacaacaaaagtacttacagaagcggcgattaattctcgc
acagaccatttgcgtggtttgaaagagaatatcatcatgggtcgtttgatccctgcaggt
actggcttaacttcttacaaacgctggaaagtgtctgtagcggaagacgacgatgtaaac
tacgtggcatctttgccaggtatgtcgccttcaactcagccgcaccaaggttag
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